[Bioc-devel] New build report

Alina Selega @||n@@@e|eg@ @end|ng |rom gm@||@com
Fri Apr 12 18:22:40 CEST 2019


Thank you for the instructions!

Can I just clarify -- I was pushing changes to my Github repository that
has a webhook set up (as per instructions from when I first submitted the
package to Bioconductor). I thought that pushes to master branch with
version bump should trigger package builds. Am I wrong about this?

Thanks,
Alina

On Fri, 12 Apr 2019 at 12:15, Shepherd, Lori <Lori.Shepherd using roswellpark.org>
wrote:

> We are not seeing the changes pushed to the git.bioconductor server.  I am
> assuming you are referring to the RELEASE_3_8 branch since you are
> referencing 1.6.1.
>
>
> Have set up the remote upstream to point to Bioconductor,
>
> http://bioconductor.org/developers/how-to/git/sync-existing-repositories/
>
>
> On your repository you can check your remotes with
> git remote -v
>
> It should include something like the following:
> upstream git using git.bioconductor.org:packages/BUMHMM.git (fetch)
> upstream git using git.bioconductor.org:packages/BUMHMM.git (push)
>
> Make sure you pushed to the upstream remote:
>
>
> http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/
>
> and that you are working on the RELEASE_3_8 branch
>
> git fetch --all
>
> git checkout RELEASE_3_8  (or git checkout upstream RELEASE_3_8)
>
> # make your changes
>
> # commit your changes
>
> # push the changes to Bioconductor with the following:
>
> git push upstream RELEASE_3_8
>
>
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Alina
> Selega <alina.selega using gmail.com>
> *Sent:* Friday, April 12, 2019 12:04:03 PM
> *To:* bioc-devel
> *Subject:* Re: [Bioc-devel] New build report
>
> Hi,
>
> Sorry, I think I must have done something wrong as the build report is not
> showing the updates to my package from 2 days ago. Could you please help me
> with this? I thought I updated the version of BUMHMM correctly (from 1.6.1
> to 1.6.2 and 1.6.3) but it is not been picked up?
>
> Thanks,
> Alina
>
> On Thu, 11 Apr 2019 at 12:47, Alina Selega <alina.selega using gmail.com> wrote:
>
> > Hi,
> >
> > I have made some minor updates to my package (BUMHMM) yesterday to fix
> the
> > warnings arising on the Windows server and pushed the changes with a
> > version bump from its current version 1.6.1. (actually, two bumps.)
> >
> > I don't see any changes in today's build report; has the build happened
> > yet?
> >
> > Thanks,
> > Alina
> >
>
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>
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