[Bioc-devel] New build report

[Shepherd, Lori]

That is not correct. The webhook was only for the package submission process.

See the link provided on linking to Bioconductor.

Other helpful github links  can be found here:
http://bioconductor.org/developers/how-to/git/





Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Alina Selega <alina.selega using gmail.com>
Sent: Friday, April 12, 2019 12:22:40 PM
To: Shepherd, Lori
Cc: bioc-devel
Subject: Re: [Bioc-devel] New build report

Thank you for the instructions!

Can I just clarify -- I was pushing changes to my Github repository that has a webhook set up (as per instructions from when I first submitted the package to Bioconductor). I thought that pushes to master branch with version bump should trigger package builds. Am I wrong about this?

Thanks,
Alina

On Fri, 12 Apr 2019 at 12:15, Shepherd, Lori <Lori.Shepherd using roswellpark.org<mailto:Lori.Shepherd using roswellpark.org>> wrote:

We are not seeing the changes pushed to the git.bioconductor server.  I am assuming you are referring to the RELEASE_3_8 branch since you are referencing 1.6.1.


Have set up the remote upstream to point to Bioconductor,

http://bioconductor.org/developers/how-to/git/sync-existing-repositories/



On your repository you can check your remotes with
git remote -v

It should include something like the following:
upstream git using git.bioconductor.org:packages/BUMHMM.git (fetch)
upstream git using git.bioconductor.org:packages/BUMHMM.git (push)

Make sure you pushed to the upstream remote:


http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/

and that you are working on the RELEASE_3_8 branch

git fetch --all

git checkout RELEASE_3_8  (or git checkout upstream RELEASE_3_8)

# make your changes

# commit your changes

# push the changes to Bioconductor with the following:

git push upstream RELEASE_3_8





Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org<mailto:bioc-devel-bounces using r-project.org>> on behalf of Alina Selega <alina.selega using gmail.com<mailto:alina.selega using gmail.com>>
Sent: Friday, April 12, 2019 12:04:03 PM
To: bioc-devel
Subject: Re: [Bioc-devel] New build report

Hi,

Sorry, I think I must have done something wrong as the build report is not
showing the updates to my package from 2 days ago. Could you please help me
with this? I thought I updated the version of BUMHMM correctly (from 1.6.1
to 1.6.2 and 1.6.3) but it is not been picked up?

Thanks,
Alina

On Thu, 11 Apr 2019 at 12:47, Alina Selega <alina.selega using gmail.com<mailto:alina.selega using gmail.com>> wrote:

> Hi,
>
> I have made some minor updates to my package (BUMHMM) yesterday to fix the
> warnings arising on the Windows server and pushed the changes with a
> version bump from its current version 1.6.1. (actually, two bumps.)
>
> I don't see any changes in today's build report; has the build happened
> yet?
>
> Thanks,
> Alina
>

        [[alternative HTML version deleted]]

_______________________________________________
Bioc-devel using r-project.org<mailto:Bioc-devel using r-project.org> mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel

This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.


This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
	[[alternative HTML version deleted]]