[Bioc-devel] Error: file larger than 5 Mb.

[Bohdan Khomtchouk]

To generate mouse.rda, I used:

library(rtracklayer)
mouse <- readGFF("
ftp://ftp.ensembl.org/pub/release-93/gtf/mus_musculus/Mus_musculus.GRCm38.93.chr.gtf.gz
")

And then I saved the object as mouse.rda


On Tue, Sep 25, 2018 at 6:33 PM Bohdan Khomtchouk <khomtchoukmed using gmail.com>
wrote:

> Here it is:
> https://github.com/Bohdan-Khomtchouk/geneXtendeR/blob/master/data/mouse.rda
>
>
> On Tue, Sep 25, 2018 at 6:23 PM Vincent Carey <stvjc using channing.harvard.edu>
> wrote:
>
>> (resending with reply all -- please reply to this one)
>>
>> Can you say some more about the content of the file?  Perhaps it can be
>> placed in ExperimentHub.  "mouse.rda" is not very descriptive.  is it
>> in your github repo?
>>
>>
>> On Tue, Sep 25, 2018 at 6:25 PM, Bohdan Khomtchouk <
>> khomtchoukmed using gmail.com> wrote:
>>
>>> I need to include an important .rda file in the /data folder of my
>>> Bioconductor package.  However, this .rda file exceeds 5 Mb in size.  Do
>>> I
>>> have any other options besides for deleting it?
>>>
>>> bohdankhomtchouk$ git push origin master
>>>
>>> Counting objects: 65, done.
>>>
>>> Delta compression using up to 8 threads.
>>>
>>> Compressing objects: 100% (65/65), done.
>>>
>>> Writing objects: 100% (65/65), 13.79 MiB | 7.62 MiB/s, done.
>>>
>>> Total 65 (delta 30), reused 0 (delta 0)
>>>
>>> remote: Error: file larger than 5 Mb.
>>>
>>> remote:
>>>
>>> remote:     File name: 'data/mouse.rda'
>>>
>>> remote:     File size: 12.9 Mb
>>>
>>> remote:
>>>
>>> remote: Please see Biocondcutor guidelines
>>>
>>> remote: https://bioconductor.org/developers/package-guidelines/
>>>
>>> remote:
>>>
>>> To git.bioconductor.org:packages/geneXtendeR
>>>
>>>  ! [remote rejected] master -> master (pre-receive hook declined)
>>>
>>> error: failed to push some refs to 'git using git.bioconductor.org:
>>> packages/geneXtendeR'
>>>
>>> --
>>> Bohdan Khomtchouk, Ph.D.
>>> AHA Postdoctoral Fellow, Gozani & Assimes Labs
>>> Department of Biology & Department of Medicine
>>> Division of Cardiovascular Medicine
>>> Stanford University
>>> Stanford, CA 94305
>>> https://profiles.stanford.edu/bohdan-khomtchouk
>>>
>>>
>>> CONFIDENTIALITY NOTICE: Information contained in this me...{{dropped:9}}
>>>
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>>
>>
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