[Bioc-devel] persistent build errors in bioconductor package

[Hillary Koch]

Hi again,

I recently wrote about some build errors my bioconductor package is
experiencing. When I check the error online, it says:

"001E# service=git-upload-pack

00000041ERR FATAL: unknown git/gitolite command: 'packages/powerTCR'
FATAL: unknown git/gitolite command: 'packages/powerTCR'
001E# service=git-upload-pack

0041ERR FATAL: unknown git/gitolite command: 'packages/powerTCR'"

I wrote about this a couple of days ago and received the response

"

Martin Morgan <mtmorgan.bioc using gmail.com>
Sep 9, 2018, 12:47 PM (3 days ago)
to me, bioc-devel
I'd guess that your remote is incorrect; it should use ssh, and the
separation between the host 'git.bioconductor.org' and repository path
'packages/powerTCR' should be a colon, e.g.,

powerTCR master$ git remote -v
origin  git using git.bioconductor.org:packages/powerTCR (fetch)
origin  git using git.bioconductor.org:packages/powerTCR (push)

This could be corrected in various ways, one is

   git remote remove origin
   git remote add origin git using git.bioconductor.org:packages/powerTCR"

I have looked into all of this again - I have an SSH key associated with
the package which BioConductor is aware of. When I check "git remote -v" in
master I see exactly
origin  git using git.bioconductor.org:packages/powerTCR (fetch)
origin  git using git.bioconductor.org:packages/powerTCR (push)
plus the fetch and push for the upstream branch which I created some time
ago.
I am not sure how to proceed here. Thanks in advance for the help!

Hillary

	[[alternative HTML version deleted]]