[Bioc-devel] build errors in bioconductor package

Martin Morgan mtmorg@n@bioc @ending from gm@il@com
Sun Sep 9 18:46:58 CEST 2018

I'd guess that your remote is incorrect; it should use ssh, and the 
separation between the host 'git.bioconductor.org' and repository path 
'packages/powerTCR' should be a colon, e.g.,

powerTCR master$ git remote -v
origin	git using git.bioconductor.org:packages/powerTCR (fetch)
origin	git using git.bioconductor.org:packages/powerTCR (push)

This could be corrected in various ways, one is

   git remote remove origin
   git remote add origin git using git.bioconductor.org:packages/powerTCR


On 09/09/2018 12:08 PM, Hillary Koch wrote:
> Hi,
> I am trying to make updates to my package on bioconductor (powerTCR). I
> thought originally that the changes weren't being pushed because maybe I
> had synced with the bioconductor git repo incorrectly. Now I see that it is
> synced propoerly, but there is some sort of build error occurring:
> "001E# service=git-upload-pack
> 00000041ERR FATAL: unknown git/gitolite command: 'packages/powerTCR'
> FATAL: unknown git/gitolite command: 'packages/powerTCR'
> 001E# service=git-upload-pack
> 0041ERR FATAL: unknown git/gitolite command: 'packages/powerTCR'"
> I am not sure what to do next as I don't know what this error is. Any
> advice is welcome.
> Thanks,
> Hillary
> 	[[alternative HTML version deleted]]
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