[Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"

[Shepherd, Lori]

Also remember if you are referring to the Citation that appears on the landing pages -  packages are built once a day and the landing page could take up to 2 days to reflect the CITATION change after you push changes to the git.bioconductor.org server with a valid version bump.


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Martin Morgan <mtmorgan.bioc using gmail.com>
Sent: Wednesday, September 5, 2018 7:37:54 AM
To: Xiangyu Luo
Cc: bioc-devel using r-project.org
Subject: Re: [Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"

Please note, there is no CITATION file anywhere in your repository!

Verify this for yourself, if you like, by changing to a temporary
location and making a new clone of your package

   git clone git using git.bioconductor.org:pacakges/BUScorrect

You have not added it to your local repository, or not committed the
change to your local repository, or not pushed the commit successfully
to the Bioconductor git repository.

Why not try to add the CITATION file back to inst/, and show what you do
to add, commit, and push your changes. Remember that you must update the
repository at the remote git.bioconductor.org.

Martin

On 09/05/2018 06:26 AM, Xiangyu Luo wrote:
> Dear Martin,
>
> For version 0.9.9, I inserted a CITATION into the "inst", but it did not
> work. Therefore, in version 0.9.10, I took the CITATION file out of the
> "inst", but it still did not work. Thank you so much for your patience
> and guidance!
>
> Best regards,
>
> Xiangyu
>
> On Wed, Sep 5, 2018 at 6:20 PM Martin Morgan <mtmorgan.bioc using gmail.com
> <mailto:mtmorgan.bioc using gmail.com>> wrote:
>
>     after I
>
>         git clone git using git.bioconductor.org:packages/BUScorrect
>
>     This is the log that I see
>
>     BUScorrect master$ git log --name-only -n 2
>     commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293
>     Author: Xiangyu Luo <xyluo1991 using gmail.com <mailto:xyluo1991 using gmail.com>>
>     Date:   Fri Aug 31 19:10:32 2018 +0800
>
>           version bump
>
>     DESCRIPTION
>
>     commit 1a61e2971a7cc213704797b99c5447847332b39f
>     Author: Xiangyu Luo <xyluo1991 using gmail.com <mailto:xyluo1991 using gmail.com>>
>     Date:   Tue Aug 28 21:45:34 2018 +0800
>
>           version bump to 0.99.9
>
>     DESCRIPTION
>
>     BUScorrect master$ ls inst/
>     NEWS.Rd  unitTests
>
>
>     Are you sure that you have added the citation file to your local git
>     repository, and pushed the local repository to git.bioconductor.org
>     <http://git.bioconductor.org>?
>
>     On 09/05/2018 06:15 AM, Xiangyu Luo wrote:
>      > Dear Martin,
>      >
>      > Thank you very much for the information! I have pushed my changes,
>      > bumped the version, and waited for a successful nightly build,
>     but the
>      > citation result did not change.  I am wondering whether the CITATION
>      > file should be in "inst" folder?
>      >
>      > Best,
>      >
>      > Xiangyu
>      >
>      >
>      >
>      > On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan
>     <mtmorgan.bioc using gmail.com <mailto:mtmorgan.bioc using gmail.com>
>      > <mailto:mtmorgan.bioc using gmail.com
>     <mailto:mtmorgan.bioc using gmail.com>>> wrote:
>      >
>      >     Have you pushed your changes to
>      >     git using git.bioconductor.org:packages/BUScorrect and waited for a
>      >     successful
>      >     nightly build
>      >
>      > http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/
>      >
>      >     ?
>      >
>      >     On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
>      >      > Dear All,
>      >      >
>      >      > The citation information of my "BUScorrect" R package is
>     shown as
>      >     an R
>      >      > package version (e.g., xxx, xxx, R package version
>     0.99.10.), but
>      >     I want it
>      >      > to be my original paper (e.g., xxx, xxx, JournalName).
>      >      >
>      >      > I tried to manually insert the "CITATION" file in the "inst"
>      >     folder, as
>      >      > described in
>      >      >
>      >
>     https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files.
>      >      > It works if the package is installed locally. However,
>     when the
>      >     package is
>      >      > installed from the Bioconductor platform, the citation is
>     still the R
>      >      > package version.  I am wondering how to change the citation on
>      >     Bioconductor?
>      >      >
>      >      > Many thanks for your great help!
>      >      >
>      >      > Xiangyu
>      >      >
>      >      >       [[alternative HTML version deleted]]
>      >      >
>      >      > _______________________________________________
>      >      > Bioc-devel using r-project.org <mailto:Bioc-devel using r-project.org>
>     <mailto:Bioc-devel using r-project.org <mailto:Bioc-devel using r-project.org>>
>      >     mailing list
>      >      > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>      >      >
>      >
>

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