[Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"
Xiangyu Luo
xyluo1991 @ending from gm@il@com
Wed Sep 5 13:54:17 CEST 2018
Thank you very much for the information, Lori!
Best regards with many thanks!
Xiangyu
On Wed, Sep 5, 2018 at 7:45 PM Shepherd, Lori <Lori.Shepherd using roswellpark.org>
wrote:
> Also remember if you are referring to the Citation that appears on the
> landing pages - packages are built once a day and the landing page could
> take up to 2 days to reflect the CITATION change after you push changes to
> the git.bioconductor.org server with a valid version bump.
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Martin
> Morgan <mtmorgan.bioc using gmail.com>
> *Sent:* Wednesday, September 5, 2018 7:37:54 AM
> *To:* Xiangyu Luo
> *Cc:* bioc-devel using r-project.org
> *Subject:* Re: [Bioc-devel] Change the citation of my Bioconductor R
> package "BUScorrect"
>
> Please note, there is no CITATION file anywhere in your repository!
>
> Verify this for yourself, if you like, by changing to a temporary
> location and making a new clone of your package
>
> git clone git using git.bioconductor.org:pacakges/BUScorrect
>
> You have not added it to your local repository, or not committed the
> change to your local repository, or not pushed the commit successfully
> to the Bioconductor git repository.
>
> Why not try to add the CITATION file back to inst/, and show what you do
> to add, commit, and push your changes. Remember that you must update the
> repository at the remote git.bioconductor.org.
>
> Martin
>
> On 09/05/2018 06:26 AM, Xiangyu Luo wrote:
> > Dear Martin,
> >
> > For version 0.9.9, I inserted a CITATION into the "inst", but it did not
> > work. Therefore, in version 0.9.10, I took the CITATION file out of the
> > "inst", but it still did not work. Thank you so much for your patience
> > and guidance!
> >
> > Best regards,
> >
> > Xiangyu
> >
> > On Wed, Sep 5, 2018 at 6:20 PM Martin Morgan <mtmorgan.bioc using gmail.com
> > <mailto:mtmorgan.bioc using gmail.com <mtmorgan.bioc using gmail.com>>> wrote:
> >
> > after I
> >
> > git clone git using git.bioconductor.org:packages/BUScorrect
> >
> > This is the log that I see
> >
> > BUScorrect master$ git log --name-only -n 2
> > commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293
> > Author: Xiangyu Luo <xyluo1991 using gmail.com <mailto:xyluo1991 using gmail.com
> <xyluo1991 using gmail.com>>>
> > Date: Fri Aug 31 19:10:32 2018 +0800
> >
> > version bump
> >
> > DESCRIPTION
> >
> > commit 1a61e2971a7cc213704797b99c5447847332b39f
> > Author: Xiangyu Luo <xyluo1991 using gmail.com <mailto:xyluo1991 using gmail.com
> <xyluo1991 using gmail.com>>>
> > Date: Tue Aug 28 21:45:34 2018 +0800
> >
> > version bump to 0.99.9
> >
> > DESCRIPTION
> >
> > BUScorrect master$ ls inst/
> > NEWS.Rd unitTests
> >
> >
> > Are you sure that you have added the citation file to your local git
> > repository, and pushed the local repository to git.bioconductor.org
> > <http://git.bioconductor.org>?
> >
> > On 09/05/2018 06:15 AM, Xiangyu Luo wrote:
> > > Dear Martin,
> > >
> > > Thank you very much for the information! I have pushed my changes,
> > > bumped the version, and waited for a successful nightly build,
> > but the
> > > citation result did not change. I am wondering whether the
> CITATION
> > > file should be in "inst" folder?
> > >
> > > Best,
> > >
> > > Xiangyu
> > >
> > >
> > >
> > > On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan
> > <mtmorgan.bioc using gmail.com <mailto:mtmorgan.bioc using gmail.com
> <mtmorgan.bioc using gmail.com>>
> > > <mailto:mtmorgan.bioc using gmail.com
> > <mailto:mtmorgan.bioc using gmail.com <mtmorgan.bioc using gmail.com>>>> wrote:
> > >
> > > Have you pushed your changes to
> > > git using git.bioconductor.org:packages/BUScorrect and waited for a
> > > successful
> > > nightly build
> > >
> > >
> http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/
> > >
> > > ?
> > >
> > > On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
> > > > Dear All,
> > > >
> > > > The citation information of my "BUScorrect" R package is
> > shown as
> > > an R
> > > > package version (e.g., xxx, xxx, R package version
> > 0.99.10.), but
> > > I want it
> > > > to be my original paper (e.g., xxx, xxx, JournalName).
> > > >
> > > > I tried to manually insert the "CITATION" file in the
> "inst"
> > > folder, as
> > > > described in
> > > >
> > >
> >
> https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files
> .
> > > > It works if the package is installed locally. However,
> > when the
> > > package is
> > > > installed from the Bioconductor platform, the citation is
> > still the R
> > > > package version. I am wondering how to change the
> citation on
> > > Bioconductor?
> > > >
> > > > Many thanks for your great help!
> > > >
> > > > Xiangyu
> > > >
> > > > [[alternative HTML version deleted]]
> > > >
> > > > _______________________________________________
> > > > Bioc-devel using r-project.org <mailto:Bioc-devel using r-project.org
> <Bioc-devel using r-project.org>>
> > <mailto:Bioc-devel using r-project.org <mailto:Bioc-devel using r-project.org
> <Bioc-devel using r-project.org>>>
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> > > >
> > >
> >
>
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