[Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"

[Xiangyu Luo]

Dear Martin,

I greatly appreciate your super kind help! I will fix that very carefully.
Thank you so much!

Best regards with many thanks!

Xiangyu

On Wed, Sep 5, 2018 at 7:37 PM Martin Morgan <mtmorgan.bioc using gmail.com>
wrote:

> Please note, there is no CITATION file anywhere in your repository!
>
> Verify this for yourself, if you like, by changing to a temporary
> location and making a new clone of your package
>
>    git clone git using git.bioconductor.org:pacakges/BUScorrect
>
> You have not added it to your local repository, or not committed the
> change to your local repository, or not pushed the commit successfully
> to the Bioconductor git repository.
>
> Why not try to add the CITATION file back to inst/, and show what you do
> to add, commit, and push your changes. Remember that you must update the
> repository at the remote git.bioconductor.org.
>
> Martin
>
> On 09/05/2018 06:26 AM, Xiangyu Luo wrote:
> > Dear Martin,
> >
> > For version 0.9.9, I inserted a CITATION into the "inst", but it did not
> > work. Therefore, in version 0.9.10, I took the CITATION file out of the
> > "inst", but it still did not work. Thank you so much for your patience
> > and guidance!
> >
> > Best regards,
> >
> > Xiangyu
> >
> > On Wed, Sep 5, 2018 at 6:20 PM Martin Morgan <mtmorgan.bioc using gmail.com
> > <mailto:mtmorgan.bioc using gmail.com>> wrote:
> >
> >     after I
> >
> >         git clone git using git.bioconductor.org:packages/BUScorrect
> >
> >     This is the log that I see
> >
> >     BUScorrect master$ git log --name-only -n 2
> >     commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293
> >     Author: Xiangyu Luo <xyluo1991 using gmail.com <mailto:xyluo1991 using gmail.com
> >>
> >     Date:   Fri Aug 31 19:10:32 2018 +0800
> >
> >           version bump
> >
> >     DESCRIPTION
> >
> >     commit 1a61e2971a7cc213704797b99c5447847332b39f
> >     Author: Xiangyu Luo <xyluo1991 using gmail.com <mailto:xyluo1991 using gmail.com
> >>
> >     Date:   Tue Aug 28 21:45:34 2018 +0800
> >
> >           version bump to 0.99.9
> >
> >     DESCRIPTION
> >
> >     BUScorrect master$ ls inst/
> >     NEWS.Rd  unitTests
> >
> >
> >     Are you sure that you have added the citation file to your local git
> >     repository, and pushed the local repository to git.bioconductor.org
> >     <http://git.bioconductor.org>?
> >
> >     On 09/05/2018 06:15 AM, Xiangyu Luo wrote:
> >      > Dear Martin,
> >      >
> >      > Thank you very much for the information! I have pushed my changes,
> >      > bumped the version, and waited for a successful nightly build,
> >     but the
> >      > citation result did not change.  I am wondering whether the
> CITATION
> >      > file should be in "inst" folder?
> >      >
> >      > Best,
> >      >
> >      > Xiangyu
> >      >
> >      >
> >      >
> >      > On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan
> >     <mtmorgan.bioc using gmail.com <mailto:mtmorgan.bioc using gmail.com>
> >      > <mailto:mtmorgan.bioc using gmail.com
> >     <mailto:mtmorgan.bioc using gmail.com>>> wrote:
> >      >
> >      >     Have you pushed your changes to
> >      >     git using git.bioconductor.org:packages/BUScorrect and waited for a
> >      >     successful
> >      >     nightly build
> >      >
> >      >
> http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/
> >      >
> >      >     ?
> >      >
> >      >     On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
> >      >      > Dear All,
> >      >      >
> >      >      > The citation information of my "BUScorrect" R package is
> >     shown as
> >      >     an R
> >      >      > package version (e.g., xxx, xxx, R package version
> >     0.99.10.), but
> >      >     I want it
> >      >      > to be my original paper (e.g., xxx, xxx, JournalName).
> >      >      >
> >      >      > I tried to manually insert the "CITATION" file in the
> "inst"
> >      >     folder, as
> >      >      > described in
> >      >      >
> >      >
> >
> https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files
> .
> >      >      > It works if the package is installed locally. However,
> >     when the
> >      >     package is
> >      >      > installed from the Bioconductor platform, the citation is
> >     still the R
> >      >      > package version.  I am wondering how to change the
> citation on
> >      >     Bioconductor?
> >      >      >
> >      >      > Many thanks for your great help!
> >      >      >
> >      >      > Xiangyu
> >      >      >
> >      >      >       [[alternative HTML version deleted]]
> >      >      >
> >      >      > _______________________________________________
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> >     <mailto:Bioc-devel using r-project.org <mailto:Bioc-devel using r-project.org>>
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> >      >      >
> >      >
> >
>

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