[Bioc-devel] ensembl 94 gtfs and fasta twobits have been added to AnnotationHub

Shepherd, Lori Lori@Shepherd @ending from Ro@wellP@rk@org
Tue Oct 16 20:20:38 CEST 2018

Hello all,

The ensembl 94 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc 3.8

Bioconductor version 3.8 (BiocManager 1.30.3), ?BiocManager::install for help

> library(AnnotationHub)

> hub = AnnotationHub()
  |======================================================================| 100%

snapshotDate(): 2018-10-16

> length(query(hub, c("ensembl", "gtf", "release-94")))
[1] 372
> length(query(hub, c("fasta", "release-94", "twobit")))
[1] 615


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

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