[Bioc-devel] BioC 3.8 build Error

[Martin, Patrick C N]

To whom it may concern,


It has recently come to my attention that my package ( ChIPanalyser1.3.2 on BioC 3.8) generates a build error.


However, I cannot seem to replicate that error on my local machine. The version of the package that I have pushed towards both github (patrickCNMartin/ChIPanalyser) and to bioconductor passes both R CMD build and R CMD check on my local machine.


I suspected that my R version could be outdated ( I was running R3.4.1) however even after updating to R3.5.1 and updating all relevant packages, I still cannot replicate the error. ChIPanalyser still passes through Build and Check.


I also tested ChIPanalyser1.3.1 that is available on the devel branch to see if that one would build on my local machine and it does (also passes R CMD check ).


Here is my sessionInfo()


R version 3.5.1 (2018-07-02)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.1 LTS

Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8
 [5] LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8
 [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] parallel  stats4    stats     graphics  grDevices utils     datasets
[8] methods   base

other attached packages:
[1] GenomicRanges_1.32.7 GenomeInfoDb_1.16.0  IRanges_2.14.12
[4] S4Vectors_0.18.3     BiocGenerics_0.26.0  BiocInstaller_1.30.0

loaded via a namespace (and not attached):
[1] zlibbioc_1.26.0        compiler_3.5.1         XVector_0.20.0
[4] tools_3.5.1            GenomeInfoDbData_1.1.0 RCurl_1.95-4.11
[7] bitops_1.0-6



I am currently out of ideas on how to replicate and fix the build error.


Thank you for your help.



Kind Regards




Patrick Martin


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