[Bioc-devel] use bioc docker images to reproduce linux build error?

[Obenchain, Valerie]

If you want to excluded trena from both 32-bit and 64-bit Windows the 
better .BBSoption is 'win' instead of both 'win32' and 'win64'.

Right now it's skipping 32-bit but executing 64-bit.

Val



On 11/16/18 3:04 PM, Obenchain, Valerie wrote:
> Hi Paul,
> 
> I can reproduce the error on my Linux system but not on the Mac and am
> not sure why this is. Haven't tried Windows yet but from the looks of
> the build report that one is fine too.
> 
> R CMD check on Linux is failing on this line in
> getRegulatoryRegions,HumanDHSFilter-method:
> 
>     db <- dbConnect(driver, user = user, host = host, dbname = dbname)
> 
> Does this need a password (and probably DBI::dbConnect for completeness)?
> 
> 
> There is a similar line in
> getEncodeRegulatoryTableNames,HumanDHSFilter-method which isn't failing
> R CMD check because the man page example is wrapped in /dontrun but it
> does fail for me when run manually. I think this one may also need a
> password - if you want to give me one off-line I can test this theory.
> 
>     db <- DBI::dbConnect(driver, user = user, host = host, dbname = dbname)
> 
> I see a .BBSoptions in trena for exclusion on Windows. The reason it's
> not being respected is because it's malformed and needs a space after
> the comma between the platforms. Just curious, what was the reason for
> excluding this on Windows?
> 
> Val
> 
> 
> 
> 
> On 11/15/18 9:23 AM, Paul Shannon wrote:
>> Our package “trena” has had build errors these last two weeks.  I have not yet been able to reproduce them on a macOS laptop.
>>
>> Would it be sensible to get the latest release and devel docker images for Bioconductor?  Are they similar enough to the build system to give me good odds on reproducing the errors seen there?
>>
>>    - Paul
>>
>> _______________________________________________
>> Bioc-devel using r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
> 
> 



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