[Bioc-devel] Several vignettes with links between them

David Jimenez-Morales biod@vidjm @ending from gm@il@com
Wed Nov 14 16:33:03 CET 2018


Thanks Kevin, your biased suggestion is perfect!

All the best,
David

On Wed, Nov 14, 2018 at 1:36 AM Kevin RUE <kevinrue67 using gmail.com> wrote:

> Hi David,
>
> First off, I'd recommend introducing non-crucial changes like this one on
> the devel branch (3.9). The devel branch is the developers' primary
> playground. If you _really_ think that users can't live without those
> vignette updates before the next release, then you can always `git
> cherry-pick` (https://git-scm.com/docs/git-cherry-pick) the commits from
> the devel branch and apply them to the release branch. Just triple-check
> before pushing anything to the Bioconductor Git repository that you're not
> introducing any bug (...which is why the release branch it is recommended
> to only _fix_ bugs on the release branch).
>
> Then, to answer your questions, I'm sure there are several examples of
> packages that use links between their multiple vignettes. Here's my
> (biased) suggestion of an example :
> https://github.com/csoneson/iSEE/blob/master/vignettes/basic.Rmd#L216
> For the result, see:
> http://bioconductor.org/packages/release/bioc/vignettes/iSEE/inst/doc/basic.html
>
>
> Best,
> Kevin
>
> On Wed, Nov 14, 2018 at 6:13 AM David Jimenez-Morales <
> biodavidjm using gmail.com> wrote:
>
>> Dear all,
>>
>> I am working on creating several vignettes for my recently released
>> package
>> (artMS), instead of having only a long one (as suggested by the bioc
>> reviewer). Two questions:
>>
>>    - Is there a way to link vignettes between themselves? For example, if
>> I
>>    have 3 new vignettes, let’s say
>>
>> vignettes/overviewQuickStart.Rmd
>> vignettes/details01.Rmd
>> vignettes/details02.Rmd
>>
>> and I want to add links in overview.Rmd to details01.Rmd and
>> details02.Rmd…
>> is this possible?
>>
>>    - Is ok if I include this improvement in the RELEASE_3_8 branch?
>>
>> Thanks a lot!
>> David
>>
>>         [[alternative HTML version deleted]]
>>
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>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>

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