[Bioc-devel] Examples of reading files of not allowed type

[Martin Morgan]

Save these under a folder inst/, conventionally inst/extdata/<your-file>.

Access them using

   system.file(package="YourPackage", "extdata", "<your-file>")

Martin

On 05/23/2018 06:44 PM, Jordan Bisanz wrote:
> Hello,
> 
> I have a developed a package called qiime2R which serves to facilitate the analysis of files from QIIME 2 (qiime2.org), one of the most commonly used 16S rRNA amplicon packages for microbiome analysis. It allows advanced analysis and data visualization in R without the loss of associated provenance tracking aiding in reproducible analyses. The situation I am running in to is that during the bioccheck, I can not have a runnable example as it requires the qiime2-specific file format (.qza). Inclusion of these files leads to a warning during R CMD check due to the inclusion of a type not allowed in data/. I have usage examples wrapped in \dontrun{}. Is it possible for this requirement to be waved?
> 
> Thanks,
> 
> Jordan
> 
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