[Bioc-devel] Cannot update my development package to Bioconductor

Turaga, Nitesh Nite@h@Tur@g@ @ending from Ro@wellP@rk@org
Mon May 14 20:50:46 CEST 2018


Did you try to ‘git pull’ as mentioned in the error message?

Best,

Nitesh 

> On May 14, 2018, at 2:48 PM, cstrato <cstrato at aon.at> wrote:
> 
> Dear GIT experts,
> 
> On Saturday I wanted to update my development package to xps_1.41.1, however until now it was not updated in the 'Multiple platform build/check report' although I could confirm the changes with Firefox: https://github.com/cstrato/xps
> 
> 
> For this reason I tried today to update my development package to xps_1.41.2.
> 
> I did follow exactly the guidelines of:
> http://bioconductor.org/developers/how-to/git/push-to-github-bioc/
> 
> 
> Here are the results:
> 
> $ cd /Volumes/T3Data/CRAN/GIT/xps
> 
> $ git remote -v
> origin  git at github.com:cstrato/xps.git (fetch)
> origin  git at github.com:cstrato/xps.git (push)
> upstream        git at git.bioconductor.org:packages/xps (fetch)
> upstream        git at git.bioconductor.org:packages/xps (push)
> 
> $ git checkout master
> Already on 'master'
> Your branch is up-to-date with 'origin/master'.
> 
> $ git add -v DESCRIPTION
> add 'DESCRIPTION'
> 
> $ git add -v NEWS
> add 'NEWS'
> 
> $ git commit -m "update for NEWS"
> [master cf326be] update for NEWS
> 2 files changed, 6 insertions(+), 1 deletion(-)
> 
> $ git push origin master
> Enter passphrase for key '/Users/cstrato/.ssh/id_rsa':
> Counting objects: 4, done.
> Delta compression using up to 8 threads.
> Compressing objects: 100% (4/4), done.
> Writing objects: 100% (4/4), 375 bytes | 0 bytes/s, done.
> Total 4 (delta 3), reused 0 (delta 0)
> remote: Resolving deltas: 100% (3/3), completed with 3 local objects.
> To github.com:cstrato/xps.git
>   7616d60..cf326be  master -> master
> 
> $ git push upstream master
> Enter passphrase for key '/Users/cstrato/.ssh/id_rsa':
> To git.bioconductor.org:packages/xps
> ! [rejected]        master -> master (fetch first)
> error: failed to push some refs to 'git at git.bioconductor.org:packages/xps'
> hint: Updates were rejected because the remote contains work that you do
> hint: not have locally. This is usually caused by another repository pushing
> hint: to the same ref. You may want to first integrate the remote changes
> hint: (e.g., 'git pull ...') before pushing again.
> hint: See the 'Note about fast-forwards' in 'git push --help' for details.
> 
> 
> # check in Firefox
> https://github.com/cstrato/xps
> 
> 
> For some reason I get the same error as on Saturday when trying to do:
> $ git push upstream master
> 
> Can you tell me what may be the reason for this error?
> ('git push --help' was not very helpful for me)
> 
> Best regards,
> Christian
> _._._._._._._._._._._._._._._._._._
> C.h.r.i.s.t.i.a.n   S.t.r.a.t.o.w.a
> V.i.e.n.n.a           A.u.s.t.r.i.a
> e.m.a.i.l:        cstrato at aon.at
> _._._._._._._._._._._._._._._._._._
> 
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel



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