[Bioc-devel] rsvg on mac
Kevin Horan
khor@n @ending from c@@ucr@edu
Mon May 14 14:03:41 CEST 2018
Valerie,
��� Sorry, I think my memory of what the actual problem was was wrong.
I have spoken to the rsvg author and he has now fixed the build of rsvg
in CRAN for OS X. So will that then just get automatically put on your
machines, or else, would it now be possible to manually put it on? Sorry
for all the confusion, and thanks for you help.
��� ChemmineR is green now because I removed the functions requiring
rsvg to get it through the release. They were new functions anyway.
Kevin
On 05/09/2018 03:25 PM, Obenchain, Valerie wrote:
> Kevin,
>
> I feel like we're not on the same page. We've had this discussion and
> both Herve and I tried to explain the situation:
>
> https://stat.ethz.ch/pipermail/bioc-devel/2018-February/012812.html
>
> We do not build CRAN packages from source on the Windows and Mac build
> machines. If a CRAN binary is not available for one of your
> dependencies, e.g., rsvg, the best thing for you to do is contact the
> maintainer or post on the r-sig-mac mailing list:
>
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
> However, ChemmineR is green on both release and devel build reports.
> I'm not sure why you are asking us (again) to install the rsvg system
> dependency on the Mac builders. Did I misunderstand what you wanted?
>
> Valerie
>
>
> On 05/09/2018 07:41 AM, Kevin Horan wrote:
>>
>> ��� Now that this past bioc release is done, and R 3.5 is stable,
>> would it be possible to install the "rsvg" package on your build
>> machines? Thanks.
>>
>> Kevin
>>
>>
>> On 02/19/2018 02:01 PM, Alexey Sergushichev wrote:
>>> Valerie, thanks. Will try to ask there.
>>>
>>> However, after looking through the mailing list it looks like
>>> R-devel builds for OS X aren't trivial and aren't part of CRAN...
>>>
>>> --
>>> Alexey
>>>
>>> On Mon, Feb 19, 2018 at 9:05 PM, Obenchain, Valerie
>>> <Valerie.Obenchain at roswellpark.org
>>> <mailto:Valerie.Obenchain at roswellpark.org>> wrote:
>>>
>>> Hi,
>>>
>>> There has been some discussion of the devel Mac binaries on the
>>> R-SIG-Mac mailing list. That list would be the best place to ask
>>> this question.
>>>
>>> https://stat.ethz.ch/pipermail/r-sig-mac/2018-January/thread.html
>>> <https://stat.ethz.ch/pipermail/r-sig-mac/2018-January/thread.html>
>>>
>>> Valerie
>>>
>>>
>>>
>>> On 02/19/2018 08:32 AM, Alexey Sergushichev wrote:
>>>> Valerie,
>>>>
>>>> Are there any estimates on how often CRAN OS X builds happen?
>>>> There are still no builds for rsvg and other packages...
>>>>
>>>> Thanks,
>>>> Alexey
>>>>
>>>> On Wed, Feb 7, 2018 at 8:09 PM, Obenchain, Valerie
>>>> <Valerie.Obenchain at roswellpark.org
>>>> <mailto:Valerie.Obenchain at roswellpark.org>> wrote:
>>>>
>>>> Hi Kevin,
>>>>
>>>> CRAN binaries for El Capitan in devel aren't available. You
>>>> can see this on the rsvg landing page:
>>>>
>>>> https://cran.r-project.org/web/packages/rsvg/index.html
>>>> <https://cran.r-project.org/web/packages/rsvg/index.html>
>>>>
>>>> Nothing we can do until CRAN makes them available.
>>>>
>>>> Valerie
>>>>
>>>>
>>>> On 02/07/2018 08:29 AM, Kevin Horan wrote:
>>>>
>>>>
>>>> The ChemmineR build is failing on the mac due to a new
>>>> dependency not
>>>> being available, the package "rsvg". Would it be possible
>>>> to install
>>>> that on the mac build machine? Thanks.
>>>>
>>>> http://bioconductor.org/checkResults/devel/bioc-LATEST/ChemmineR/merida2-install.html
>>>> <http://bioconductor.org/checkResults/devel/bioc-LATEST/ChemmineR/merida2-install.html>
>>>>
>>>>
>>>> Kevin
>>>>
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