[Bioc-devel] rsvg on mac

[Obenchain, Valerie]

Kevin,

I feel like we're not on the same page. We've had this discussion and both Herve and I tried to explain the situation:

  https://stat.ethz.ch/pipermail/bioc-devel/2018-February/012812.html

We do not build CRAN packages from source on the Windows and Mac build machines. If a CRAN binary is not available for one of your dependencies, e.g., rsvg, the best thing for you to do is contact the maintainer or post on the r-sig-mac mailing list:

  https://stat.ethz.ch/mailman/listinfo/r-sig-mac

However, ChemmineR is green on both release and devel build reports. I'm not sure why you are asking us (again) to install the rsvg system dependency on the Mac builders. Did I misunderstand what you wanted?

Valerie


On 05/09/2018 07:41 AM, Kevin Horan wrote:

    Now that this past bioc release is done, and R 3.5 is stable, would it be possible to install the "rsvg" package on your build machines? Thanks.

Kevin

On 02/19/2018 02:01 PM, Alexey Sergushichev wrote:
Valerie, thanks. Will try to ask there.

However, after looking through the mailing list it looks like R-devel builds for OS X aren't trivial and aren't part of CRAN...

--
Alexey

On Mon, Feb 19, 2018 at 9:05 PM, Obenchain, Valerie <Valerie.Obenchain at roswellpark.org<mailto:Valerie.Obenchain at roswellpark.org>> wrote:
Hi,

There has been some discussion of the devel Mac binaries on the R-SIG-Mac mailing list. That list would be the best place to ask this question.

https://stat.ethz.ch/pipermail/r-sig-mac/2018-January/thread.html

Valerie



On 02/19/2018 08:32 AM, Alexey Sergushichev wrote:
Valerie,

Are there any estimates on how often CRAN OS X builds happen? There are still no builds for rsvg and other packages...

Thanks,
Alexey

On Wed, Feb 7, 2018 at 8:09 PM, Obenchain, Valerie <Valerie.Obenchain at roswellpark.org<mailto:Valerie.Obenchain at roswellpark.org>> wrote:
Hi Kevin,

CRAN binaries for El Capitan in devel aren't available. You can see this on the rsvg landing page:

https://cran.r-project.org/web/packages/rsvg/index.html

Nothing we can do until CRAN makes them available.

Valerie


On 02/07/2018 08:29 AM, Kevin Horan wrote:


The ChemmineR build is failing on the mac due to a new dependency not
being available, the package "rsvg". Would it be possible to install
that on the mac build machine? Thanks.

http://bioconductor.org/checkResults/devel/bioc-LATEST/ChemmineR/merida2-install.html


Kevin

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