[Bioc-devel] biocValid() and package version

[Nicolas Descostes]

yes that was the pb. I have to remove.packages from the wrong libraries.
Thank you so much.

Nicolas

2018-05-11 7:56 GMT-04:00 Shepherd, Lori <Lori.Shepherd at roswellpark.org>:

> Not sure if this could be the case - but do you have the package installed
> in multiple locations / multiple .libPaths()   perhaps it is picking up the
> package version that is in a different location?
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of
> Nicolas Descostes <nicolas.descostes at gmail.com>
> *Sent:* Thursday, May 10, 2018 5:44:43 PM
> *To:* bioc-devel at r-project.org
> *Subject:* [Bioc-devel] biocValid() and package version
>
> Hi,
>
> I am using R-devel with R 3.5 as my package will be released with this
> version.
>
> I want to make sure that I am using the latest version of all packages:
>
> library("BiocInstaller")
> biocValid()
>
>                            Installed     Built   ReposVer
> airway                 "0.112.0"   "3.4.3" "0.115.0"
> annotate               "1.56.1"    "3.4.3" "1.59.0"
> [..]
> ShortRead              "1.36.0"    "3.4.3" "1.39.0"
>
> library("ShortRead")
> > packageVersion("ShortRead")
> [1] ‘1.39.0’
>
> Do you know why biocValid() is not catching the right installed version? I
> found a similar post here (
> https://stat.ethz.ch/pipermail/bioc-devel/2014-November/006602.html) but
> could not find the answer.
>
> Thanks,
>
> Nicolas
>
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