[Bioc-devel] biocValid() and package version

[Shepherd, Lori]

Not sure if this could be the case - but do you have the package installed in multiple locations / multiple .libPaths()   perhaps it is picking up the package version that is in a different location?


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Nicolas Descostes <nicolas.descostes at gmail.com>
Sent: Thursday, May 10, 2018 5:44:43 PM
To: bioc-devel at r-project.org
Subject: [Bioc-devel] biocValid() and package version

Hi,

I am using R-devel with R 3.5 as my package will be released with this
version.

I want to make sure that I am using the latest version of all packages:

library("BiocInstaller")
biocValid()

                           Installed     Built   ReposVer
airway                 "0.112.0"   "3.4.3" "0.115.0"
annotate               "1.56.1"    "3.4.3" "1.59.0"
[..]
ShortRead              "1.36.0"    "3.4.3" "1.39.0"

library("ShortRead")
> packageVersion("ShortRead")
[1] �1.39.0�

Do you know why biocValid() is not catching the right installed version? I
found a similar post here (
https://stat.ethz.ch/pipermail/bioc-devel/2014-November/006602.html) but
could not find the answer.

Thanks,

Nicolas

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