[Bioc-devel] CRAN R 3.5 binary - where is it?

[Hervé Pagès]

On 05/10/2018 12:13 PM, Kenneth Condon wrote:
> Hi all,
> 
> It sounds like the best thing to do is go back to the original binary and
> remove the source installation.
> 
> Clarice, you know I can't even remember if I did that - I think I might try
> fix the current dependency issue tomorrow, but if any more come up, Ill go
> back to the begining do as you suggested with the binary again.
> 
> Herve, the link I provided has R3.4.4 .deb binaries from 2018 - not sure
> where you are getting the 2014 from.

According to the link I sent you, CRAN provides R .deb packages for the
following versions of Ubuntu: Artful Aardvark (17.10), Zesty Zapus
(17.04), Xenial Xerus (16.04; LTS), and Trusty Tahr (14.04; LTS).

You provided a link to .deb packages for Ubuntu Trusty. Ubuntu Trusty
is from 2014 so is somewhat outdated. With an EOL scheduled for next
year I think.

Anyway, I don't see any R 3.5.0 .deb package on CRAN for any of
these Ubuntu versions yet. Please make sure to check the link I sent
you. It tells you what to do if you have questions about those packages.

Cheers,
H.

> 
> Thanks,
> Kenneth
> 
> On Thu, May 10, 2018 at 7:43 PM, Clarice Groeneveld <
> clari.groeneveld at gmail.com> wrote:
> 
>> Hi Kenneth,
>>
>> I see you're on Ubuntu 14.04. Have you tried in Terminal:
>> sudo apt-get update
>> sudo apt-get upgrade
>>
>> to upgrade your R version?
>>
>> Best,
>> Clarice.
>>
>> Em qui, 10 de mai de 2018 às 14:20, Kenneth Condon <roonysgalbi at gmail.com>
>> escreveu:
>>
>>> Hi all,
>>>
>>> I want to submit a package to bioconductor this week but first I want to
>>> build it on the latest R 3.5 release (with bioconductor 3.7). However,
>>> CRAN
>>> only has 3.4 binaries
>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__cran.r-2Dproject.org_bin_linux_ubuntu_trusty_-3FC-3DN-3BO-3DA&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=rgKDL-SEoO8XpuX4jdMnUPYoVWS4DaJ9O2LcugvN5mY&s=o5QNX-FSUAzZdmBhik0P991kwi874S7MpTVvzrXDco0&e=> so I've had
>>> to build 3.5 from source which has unfortunately sent me to dependency
>>> hell.
>>>
>>> Rather than spending the next 3 days fixing all dependencies, does anyone
>>> know when the 3.5 dependency is likely to surface?
>>>
>>> I think bioconductor 3.7 cannot be installed on R 3.4 so any advice would
>>> be appreciated.
>>>
>>> Thanks,
>>> Kenneth.
>>>
>>>          [[alternative HTML version deleted]]
>>>
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>>
> 
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> 
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-- 
Hervé Pagès

Program in Computational Biology
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