[Bioc-devel] Update data in data package, pcxnData

[Sokratis Kariotis]

Hey Lori,

While under the RELEASE_3_6 branch and using git fetch upstream or git push
upstream/RELEASE_3_6:






*Warning: Permanently added 'git.bioconductor.org
<http://git.bioconductor.org>,34.192.48.227' (ECDSA) to the list of known
hosts.Permission denied (publickey).fatal: Could not read from remote
repository.Please make sure you have the correct access rightsand the
repository exists.*


git remove -v results to:






*origin  https://github.com/hidelab/pcxn.git
<https://github.com/hidelab/pcxn.git> (fetch)origin
https://github.com/hidelab/pcxn.git <https://github.com/hidelab/pcxn.git>
(push)upstream        git at git.bioconductor.org:packages/pcxn.git
(fetch)upstream        git at git.bioconductor.org:packages/pcxn.git (push)*
The ssh command also gives:




*Warning: Permanently added 'git.bioconductor.org
<http://git.bioconductor.org>,34.192.48.227' (ECDSA) to the list of known
hosts.Permission denied (publickey).*

*Cheers,*

*Sokratis*


On 23 March 2018 at 11:35, Shepherd, Lori <Lori.Shepherd at roswellpark.org>
wrote:

> Where you able to update master?  Or are you having access trouble
> for both branches?  Please use reply all so that other members on the team
> can answer when appropriate and the responses go to the mailing list.
>
> Your package is in the git repository and has access with the ID s.kariotis.
> Can you please copy the commands with the output you are receiving that
> make you think that you do not have access?
>
> Please also include the output of
>
> git remote -v
>
> and
>
> ssh -T git at git.bioconductor.org
> (you should see RW access next to your package)
>
>
> Please
>
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
>
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of
> Shepherd, Lori <Lori.Shepherd at RoswellPark.org>
> *Sent:* Friday, November 24, 2017 10:13 AM
> *To:* Sokratis Kariotis; bioc-devel
> *Subject:* Re: [Bioc-devel] Update data in data package, pcxnData
>
> You should make changes and push to the master branch of your package at
> git at git.bioconductor.org:packages/pcxnData.git  .  This will update the
> devel version of your package.
>
> As long as the package builds correctly, It will be available for download
> immediately with Bioc devel 3.7.
>
>
> We don't encourage updating release unless it is a bug correction or
> justifiable updates, but if you push changes to the RELEASE_3_6 branch they
> will also be available in Bioc 3.6
>
>
> Instructions for pushing data to our git repository can be found here:
>
> http://bioconductor.org/developers/how-to/git/
>
>
> Remember to do a pull from our git repositories if you have not done so
> since the release as we update the versions when rolling out the release.
>
> http://bioconductor.org/developers/how-to/version-numbering/
>
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
> ________________________________
> From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Sokratis
> Kariotis <s.kariotis at sheffield.ac.uk>
> Sent: Friday, November 24, 2017 10:02:13 AM
> To: bioc-devel
> Subject: [Bioc-devel] Update data in data package, pcxnData
>
> Hi all,
>
> I have a data package (pcxnData) that got released in 3.6 and I am
> wondering how long will it take, if I changed some of the data in that
> package for them to be publicly available in bioconductor instead of the
> old data. Can they be available sooner than the next release? Thanks in
> advance.
>
> Cheers,
> Sokratis Kariotis
>
>
>
> --
> Sokratis Kariotis
> Scientific Programmer
> Hidelab
> Sheffield Institute for Translational Neuroscience
> 385a Glossop Rd, Sheffield, S10 2HQ
> <https://maps.google.com/?q=385a+Glossop+Rd,+Sheffield,+S10+2HQ&entry=gmail&source=g>
>
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-- 
Sokratis Kariotis
Scientific Programmer
Hidelab
Sheffield Institute for Translational Neuroscience
385a Glossop Rd, Sheffield, S10 2HQ

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