[Bioc-devel] Fixing bugs in release version
j@@on@@ervi@@ @ending from ki@@e
Thu Jul 12 11:53:40 CEST 2018
It would appear that the version on Eugenia’s RELEASE_3_7 branch on her git repo is 1.3.1 (https://github.com/eugeniaeueu/Onassis/commit/def6111f80db3ed03a991416ce724425d2027d01) so why is it 1.2.1 on the Bioconductor repo?
p.s. have recently been struggling with a similar issue so, just asking to try to get a better understanding
> On 12 Jul 2018, at 11:12, Mike Smith <grimbough using gmail.com> wrote:
> It looks to me like you have made the changes correctly. When I checkout
> your packages you have versions 1.3.1 and 1.2.1 for the master and
> RELEASE_3_7 branches respectively.
> -> % git checkout --quiet master && cat DESCRIPTION | grep Version
> Version: 1.3.1
> -> % git checkout --quiet RELEASE_3_7 && cat DESCRIPTION | grep Version
> Version: 1.2.1
> The reason it still says 1.2.0 on the landing page is that there can be
> delay before changes in the git repository propagate to the home pge. You
> can check the last time a snapshot of your packages was taken on
> http://bioconductor.org/checkResults/release/bioc-LATEST/Onassis/ For you
> this was Snapshot Date: 2018-07-10 16:46:08 -0400 (Tue, 10 Jul 2018) which
> is before your commit with the version bump. It would expect the change to
> propagate through sometime today.
> On Thu, 12 Jul 2018 at 10:52, Eugenia Galeota <eugenia.galeota using gmail.com>
>> Good morning,
>> I'm writing because I tried to fix some bugs in the current release version
>> of my package Onassis.
>> I followed these instructions (
>> but maybe I messed up with the version in the DESCRIPTION file. In the
>> Bioconductor page RELEASE_3_7
>> https://www.bioconductor.org/packages/3.7/bioc/html/Onassis.html Onassis
>> has 1.2.0 version, while actually in the repository I don't know how I am
>> at version 1.3.1 (shouldn't it be a development version?).
>> Will my bug fixes be available in the RELEASE_3_7 to users installing the
>> I thought that Onassis version after the bug fixes, should have been 1.2.1.
>> Is that correct? How can I update just the current Onassis package in
>> RELEASE_3_7 (the current one) ?
>> Thanks Eugenia
>> Eugenia Galeota, PhD
>> Center for Genomic Science of IIT using SEMM
>> Computational Epigenomics
>> Email: eugenia.galeota using iit.it
>> Tel: +39 02 9437 5046
>> Via Adamello 16, 20139 Milan, Italy
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