[Bioc-devel] Cairo Error on MacOS on Bioc 3.9

[Obenchain, Valerie]

Hi Christian,

This is a known - there are no Mac binaries for El Capitan for R 3.6 at 
this point. We don't build Cairo from source on the Mac builder, we use 
the binary from CRAN. Once CRAN makes the binary available your package 
will build.

Valerie





On 12/14/18 4:37 AM, Christian Mertes wrote:
> Dear Bioconductor team,
> 
> I noticed that my package OUTRIDER and also some others have an issue
> with the Cairo package.
> 
> The error is:
> 
> .onLoad failed in loadNamespace() for 'Cairo', details:
>     call: dyn.load(file, DLLpath = DLLpath, ...)
>     error: unable to load shared object
> '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Cairo/libs/Cairo.so':
> dlopen(/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Cairo/libs/Cairo.so,
> 6): Symbol not found: _FcConfigGetCurrent
>     Referenced from:
> /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Cairo/libs/Cairo.so
>     Expected in: flat namespace
>    in
> /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Cairo/libs/Cairo.so
> 
> https://bioc.ism.ac.jp/checkResults/devel/bioc-LATEST/OUTRIDER/merida2-checksrc.html
> https://bioc.ism.ac.jp/checkResults/devel/bioc-LATEST/CATALYST/merida2-checksrc.html
> 
> Also the same error came up in earlier versions already and was then solved.
> 
> https://stat.ethz.ch/pipermail/bioc-devel/2015-June/007643.html
> 
> I guess this is rather an issue of the test server. But if you need more
> information on this, please let me know.
> 
> Best regards,
> 
> Christian Mertes
> 



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