[Bioc-devel] Cairo Error on MacOS on Bioc 3.9

[Christian Mertes]

Dear Valerie,

thanks for the heads-up on this.

Best,

Christian

Am 12/17/2018 um 6:52 PM schrieb Obenchain, Valerie:
> Hi Christian,
>
> This is a known - there are no Mac binaries for El Capitan for R 3.6 at
> this point. We don't build Cairo from source on the Mac builder, we use
> the binary from CRAN. Once CRAN makes the binary available your package
> will build.
>
> Valerie
>
>
>
>
>
> On 12/14/18 4:37 AM, Christian Mertes wrote:
>> Dear Bioconductor team,
>>
>> I noticed that my package OUTRIDER and also some others have an issue
>> with the Cairo package.
>>
>> The error is:
>>
>> .onLoad failed in loadNamespace() for 'Cairo', details:
>>      call: dyn.load(file, DLLpath = DLLpath, ...)
>>      error: unable to load shared object
>> '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Cairo/libs/Cairo.so':
>> dlopen(/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Cairo/libs/Cairo.so,
>> 6): Symbol not found: _FcConfigGetCurrent
>>      Referenced from:
>> /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Cairo/libs/Cairo.so
>>      Expected in: flat namespace
>>     in
>> /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Cairo/libs/Cairo.so
>>
>> https://bioc.ism.ac.jp/checkResults/devel/bioc-LATEST/OUTRIDER/merida2-checksrc.html
>> https://bioc.ism.ac.jp/checkResults/devel/bioc-LATEST/CATALYST/merida2-checksrc.html
>>
>> Also the same error came up in earlier versions already and was then solved.
>>
>> https://stat.ethz.ch/pipermail/bioc-devel/2015-June/007643.html
>>
>> I guess this is rather an issue of the test server. But if you need more
>> information on this, please let me know.
>>
>> Best regards,
>>
>> Christian Mertes
>>
>
>
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-- 
*Christian Mertes* | PhD Student / Lab Administrator

*Gagneur Lab* - Computational Genomics
I12 - Department of Informatics
Technical University of Munich
Boltzmannstr. 3, 85748 Garching, Germany

mertes using in.tum.de <mailto:mertes using in.tum.de> | http://gagneurlab.in.tum.de

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