[Bioc-devel] MAEndToEnd workflow dropped from the build system?

Bernd Klaus bernd@kl@u@ @ending from embl@de
Thu Aug 23 14:48:25 CEST 2018

*ahem*, yes I actually did not run R CMD check before pushing, sorry!

thanks a lot for your prompt response Lori!

Best wishes,


On Do, 2018-08-23 at 11:08 +0000, Shepherd, Lori wrote:
> I think this may be do to a malformed DESCRIPTION file that was
> committed in either 1.99.2 or 1.99.3.  When I tried to build the
> package I got
> Workflows$ R CMD build maEndToEnd/
> * checking for file 'maEndToEnd/DESCRIPTION' ...Error : file
> '/home/lori/b/Workflows/maEndToEnd/DESCRIPTION' is not in valid DCF
> format
>  EXISTS but not correct format
> I think this is because there were newline breaks in the description
> field of the DESCRIPTION file. 
> I pushed an updated and hopefully it will propagate on tomorrow's
> build of the workflows.  I will try and keep an eye on this to make
> sure it corrected the issue but if you still do not see the package
> propagating next week please reach back out. 
> Lori Shepherd
> Bioconductor Core Team
> Roswell Park Cancer Institute
> Department of Biostatistics & Bioinformatics
> Elm & Carlton Streets
> Buffalo, New York 14263
> From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of
> Bernd Klaus <bernd.klaus using embl.de>
> Sent: Thursday, August 23, 2018 4:15:17 AM
> To: bioc-devel
> Subject: [Bioc-devel] MAEndToEnd workflow dropped from the build
> system?
> Dear Bioc-Team,
> it seem like our MyEndToEnd workflow has somehow 
> been dropped from the build system, the last build is
> from Aug 8th:
> http://bioconductor.org/checkResults/3.8/workflows-LATEST/maEndToEnd/
> at version 1.99.1
> However, the current version is 1.99.4, the last commit is 
> 135704a  by Lori. See here on github:
> https://github.com/b-klaus/maEndToEnd/commit/135704a1ad01025bef967666
> 31
> f5bbf87d874f99
> For some reason this is not propagated to the build system ...
> Thanks a lot for your help!
> Bernd
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