[Bioc-devel] MAEndToEnd workflow dropped from the build system?

Shepherd, Lori Lori@Shepherd @ending from Ro@wellP@rk@org
Thu Aug 23 13:08:58 CEST 2018

I think this may be do to a malformed DESCRIPTION file that was committed in either 1.99.2 or 1.99.3.  When I tried to build the package I got

Workflows$ R CMD build maEndToEnd/
* checking for file 'maEndToEnd/DESCRIPTION' ...Error : file '/home/lori/b/Workflows/maEndToEnd/DESCRIPTION' is not in valid DCF format
 EXISTS but not correct format

I think this is because there were newline breaks in the description field of the DESCRIPTION file.

I pushed an updated and hopefully it will propagate on tomorrow's build of the workflows.  I will try and keep an eye on this to make sure it corrected the issue but if you still do not see the package propagating next week please reach back out.

Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Bernd Klaus <bernd.klaus using embl.de>
Sent: Thursday, August 23, 2018 4:15:17 AM
To: bioc-devel
Subject: [Bioc-devel] MAEndToEnd workflow dropped from the build system?

Dear Bioc-Team,

it seem like our MyEndToEnd workflow has somehow
been dropped from the build system, the last build is
from Aug 8th:


at version 1.99.1

However, the current version is 1.99.4, the last commit is
135704a  by Lori. See here on github:


For some reason this is not propagated to the build system ...

Thanks a lot for your help!


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