[Bioc-devel] workflow builder error: winbuilder1 says "pdflatex is not available"

[Andrzej Oleś]

Hi Mike,

thanks for reporting this. Strange, not sure what the problem was because
now I was able to rebuild the workflow without actually reinstalling or
reconfiguring anything on the builder. Maybe this was a transient issue
related to the fact that I updated the LaTeX distro on the builder some
days ago.

Best,
Andrzej


On Thu, Sep 14, 2017 at 6:08 PM, Michael Love <michaelisaiahlove at gmail.com>
wrote:

> hi,
>
> I pushed a change to rnaseqGene workflow and only winbuilder1 had a
> problem:
>
> * checking PDF version of manual ...Warning: running command
> '"C:/Progra~1/R/R-3.4.0/bin/x64/Rcmd.exe" Rd2pdf  --batch --no-preview
> --build-dir="C:/Windows/TEMP/RtmpE9T1fB/Rd2pdff6059a733c8" --no-clean
> -o  rnaseqGene-manual.pdf
> "C:/DOCBUILDER_TEMP/jenkins-rnaseqGene-label=winbuilder1-
> 81/rnaseqGene.Rcheck/rnaseqGene"'
> had status 1
>  WARNING
> LaTeX errors when creating PDF version.
> This typically indicates Rd problems.
> * checking PDF version of manual without hyperrefs or index
> ...Warning: running command '"C:/Progra~1/R/R-3.4.0/bin/x64/Rcmd.exe"
> Rd2pdf  --batch --no-preview
> --build-dir="C:/Windows/TEMP/RtmpE9T1fB/Rd2pdff603f1c7162" --no-clean
> --no-index -o  rnaseqGene-manual.pdf
> C:/DOCBUILDER_TEMP/jenkins-rnaseqGene-label=winbuilder1-
> 81/rnaseqGene.Rcheck/rnaseqGene'
> had status 1
>  ERROR
> Re-running with no redirection of stdout/stderr.
> Hmm ... looks like a package
> Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  :
>   pdflatex is not available
> Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  :
>   pdflatex is not available
> Error in running tools::texi2pdf()
>
> The full report:
>
> http://docbuilder.bioconductor.org:8080/job/rnaseqGene/label=winbuilder1/
> lastBuild/console
>
> thanks,
> Mike
>
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