[Bioc-devel] workflow builder error: winbuilder1 says "pdflatex is not available"

[Michael Love]

Thank you for the quick fix and reply Andrzej. best, Mike

On Thu, Sep 14, 2017 at 6:30 PM, Andrzej Oleś <andrzej.oles at gmail.com> wrote:
> Hi Mike,
>
> thanks for reporting this. Strange, not sure what the problem was because
> now I was able to rebuild the workflow without actually reinstalling or
> reconfiguring anything on the builder. Maybe this was a transient issue
> related to the fact that I updated the LaTeX distro on the builder some days
> ago.
>
> Best,
> Andrzej
>
>
> On Thu, Sep 14, 2017 at 6:08 PM, Michael Love <michaelisaiahlove at gmail.com>
> wrote:
>>
>> hi,
>>
>> I pushed a change to rnaseqGene workflow and only winbuilder1 had a
>> problem:
>>
>> * checking PDF version of manual ...Warning: running command
>> '"C:/Progra~1/R/R-3.4.0/bin/x64/Rcmd.exe" Rd2pdf  --batch --no-preview
>> --build-dir="C:/Windows/TEMP/RtmpE9T1fB/Rd2pdff6059a733c8" --no-clean
>> -o  rnaseqGene-manual.pdf
>>
>> "C:/DOCBUILDER_TEMP/jenkins-rnaseqGene-label=winbuilder1-81/rnaseqGene.Rcheck/rnaseqGene"'
>> had status 1
>>  WARNING
>> LaTeX errors when creating PDF version.
>> This typically indicates Rd problems.
>> * checking PDF version of manual without hyperrefs or index
>> ...Warning: running command '"C:/Progra~1/R/R-3.4.0/bin/x64/Rcmd.exe"
>> Rd2pdf  --batch --no-preview
>> --build-dir="C:/Windows/TEMP/RtmpE9T1fB/Rd2pdff603f1c7162" --no-clean
>> --no-index -o  rnaseqGene-manual.pdf
>>
>> C:/DOCBUILDER_TEMP/jenkins-rnaseqGene-label=winbuilder1-81/rnaseqGene.Rcheck/rnaseqGene'
>> had status 1
>>  ERROR
>> Re-running with no redirection of stdout/stderr.
>> Hmm ... looks like a package
>> Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,
>> :
>>   pdflatex is not available
>> Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,
>> :
>>   pdflatex is not available
>> Error in running tools::texi2pdf()
>>
>> The full report:
>>
>>
>> http://docbuilder.bioconductor.org:8080/job/rnaseqGene/label=winbuilder1/lastBuild/console
>>
>> thanks,
>> Mike
>>
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>
>