[Bioc-devel] workflow builder error: winbuilder1 says "pdflatex is not available"

Michael Love michaelisaiahlove at gmail.com
Thu Sep 14 18:08:59 CEST 2017


hi,

I pushed a change to rnaseqGene workflow and only winbuilder1 had a problem:

* checking PDF version of manual ...Warning: running command
'"C:/Progra~1/R/R-3.4.0/bin/x64/Rcmd.exe" Rd2pdf  --batch --no-preview
--build-dir="C:/Windows/TEMP/RtmpE9T1fB/Rd2pdff6059a733c8" --no-clean
-o  rnaseqGene-manual.pdf
"C:/DOCBUILDER_TEMP/jenkins-rnaseqGene-label=winbuilder1-81/rnaseqGene.Rcheck/rnaseqGene"'
had status 1
 WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
* checking PDF version of manual without hyperrefs or index
...Warning: running command '"C:/Progra~1/R/R-3.4.0/bin/x64/Rcmd.exe"
Rd2pdf  --batch --no-preview
--build-dir="C:/Windows/TEMP/RtmpE9T1fB/Rd2pdff603f1c7162" --no-clean
--no-index -o  rnaseqGene-manual.pdf
C:/DOCBUILDER_TEMP/jenkins-rnaseqGene-label=winbuilder1-81/rnaseqGene.Rcheck/rnaseqGene'
had status 1
 ERROR
Re-running with no redirection of stdout/stderr.
Hmm ... looks like a package
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  :
  pdflatex is not available
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  :
  pdflatex is not available
Error in running tools::texi2pdf()

The full report:

http://docbuilder.bioconductor.org:8080/job/rnaseqGene/label=winbuilder1/lastBuild/console

thanks,
Mike



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