[Bioc-devel] Package DMCHMM is not installed

[Leonardo Collado Torres]

>From http://bioconductor.org/developers/package-submission/

Following acceptance of a package:

Packages accepted on the tracker repository are added to the ‘devel’
branch of the Bioconductor SVN repository, with the current version
number of the accepted package.
Packages are then built by the Bioconductor nightly build process. If
the build is successful, the package has its own ‘landing page’
created, and the package is made available to users of the ‘devel’
branch of Bioconductor via biocLite().



Basically, new packages are added to bioc-devel until the next
Bioconductor version is released. At that point, the packages are then
also available on bioc-release.

On Tue, Sep 12, 2017 at 9:01 AM, Farhad Shokoohi <shokoohi at icloud.com> wrote:
> Thanks but that didn’t clarify why users should install the dev version.
> Why the package is not on the page
> http://bioconductor.org/packages/release/BiocViews.html#___Software
> Sorry this is first time I submitted a package to bioconductor and I am not
> so familiar with instructions.
>
>
> On Sep 11, 2017, at 11:31 PM, Leonardo Collado Torres <lcollado at jhu.edu>
> wrote:
>
> It's only available on bioc-devel, not bioc-release. See
> http://bioconductor.org/packages/devel/bioc/html/DMCHMM.html and
> http://bioconductor.org/developers/how-to/useDevel/
>
> On Mon, Sep 11, 2017 at 7:17 PM, Farhad Shokoohi <shokoohi at icloud.com>
> wrote:
>
> Hello,
>
> I tried to install my package on a machine and it gives the following
> warning which does not make sense.
>
> source("https://bioconductor.org/biocLite.R")
>
> Bioconductor version 3.5 (BiocInstaller 1.26.1), ?biocLite for help
>
> biocLite("DMCHMM")
>
> BioC_mirror: https://bioconductor.org
> Using Bioconductor 3.5 (BiocInstaller 1.26.1), R 3.4.1 (2017-06-30).
> Installing package(s) ‘DMCHMM’
> Old packages: 'limma'
> Update all/some/none? [a/s/n]:
> n
> Warning message:
> package ‘DMCHMM’ is not available (for R version 3.4.1)
>
>
>
>
> ———
> Farhad Shokoohi
> Assistant Professor
> Department of Mathematics & Statistics
> Concordia University
> S-LB 915-1, J.W. McConnell Building,
> 1455 De Maisonneuve W.,
> Montreal, Quebec, Canada, H3G 1M8
> Office: (514) 848-2424 ext. 4017
> Fax: (514) 848-2831
> shokoohi at icloud.com
>
>
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