[Bioc-devel] Package DMCHMM is not installed

[Farhad Shokoohi]

Thanks.
Everything is clear to me now. 


> On Sep 12, 2017, at 9:08 AM, Shepherd, Lori <Lori.Shepherd at RoswellPark.org> wrote:
> 
> Bioconductor has a release version and a devel version.  Releases happen twice a year (The next occurring at the end of October).  All new packages accepted will remain in the devel version of Bioconductor until the next schedule release.  The package for that time, will only be available on the devel version of Bioconductor. See http://bioconductor.org/developers/how-to/useDevel/ <http://bioconductor.org/developers/how-to/useDevel/> .  Upon the next release, it will then be available in both release and devel.  
> 
> The link you provided is for Bioconductor release 3.5 only:
> http://bioconductor.org/packages/release/BiocViews.html#___Software <http://bioconductor.org/packages/release/BiocViews.html#___Software>
> 
> The package is included in the devel BiocViews for Bioconductor 3.6: 
> http://bioconductor.org/packages/devel/BiocViews.html#___Software <http://bioconductor.org/packages/devel/BiocViews.html#___Software>
> 
> 
> 
> Lori Shepherd
> Bioconductor Core Team
> Roswell Park Cancer Institute
> Department of Biostatistics & Bioinformatics
> Elm & Carlton Streets
> Buffalo, New York 14263
> From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Farhad Shokoohi <shokoohi at icloud.com>
> Sent: Tuesday, September 12, 2017 9:01:52 AM
> To: Leonardo Collado Torres
> Cc: Bioc-devel
> Subject: Re: [Bioc-devel] Package DMCHMM is not installed
>  
> Thanks but that didn’t clarify why users should install the dev version. 
> Why the package is not on the page
> http://bioconductor.org/packages/release/BiocViews.html#___Software <http://bioconductor.org/packages/release/BiocViews.html#___Software>
> Sorry this is first time I submitted a package to bioconductor and I am not so familiar with instructions. 
> 
> 
> > On Sep 11, 2017, at 11:31 PM, Leonardo Collado Torres <lcollado at jhu.edu> wrote:
> > 
> > It's only available on bioc-devel, not bioc-release. See
> > http://bioconductor.org/packages/devel/bioc/html/DMCHMM.html <http://bioconductor.org/packages/devel/bioc/html/DMCHMM.html> and
> > http://bioconductor.org/developers/how-to/useDevel/ <http://bioconductor.org/developers/how-to/useDevel/>
> > 
> > On Mon, Sep 11, 2017 at 7:17 PM, Farhad Shokoohi <shokoohi at icloud.com> wrote:
> >> Hello,
> >> 
> >> I tried to install my package on a machine and it gives the following warning which does not make sense.
> >> 
> >>> source("https://bioconductor.org/biocLite.R <https://bioconductor.org/biocLite.R>")
> >> Bioconductor version 3.5 (BiocInstaller 1.26.1), ?biocLite for help
> >>> biocLite("DMCHMM")
> >> BioC_mirror: https://bioconductor.org <https://bioconductor.org/>
> >> Using Bioconductor 3.5 (BiocInstaller 1.26.1), R 3.4.1 (2017-06-30).
> >> Installing package(s) ‘DMCHMM’
> >> Old packages: 'limma'
> >> Update all/some/none? [a/s/n]:
> >> n
> >> Warning message:
> >> package ‘DMCHMM’ is not available (for R version 3.4.1)
> >>> 
> >> 
> >> 
> >> ———
> >> Farhad Shokoohi
> >> Assistant Professor
> >> Department of Mathematics & Statistics
> >> Concordia University
> >> S-LB 915-1, J.W. McConnell Building,
> >> 1455 De Maisonneuve W.,
> >> Montreal, Quebec, Canada, H3G 1M8
> >> Office: (514) 848-2424 ext. 4017
> >> Fax: (514) 848-2831
> >> shokoohi at icloud.com
> >> 
> >> 
> >>        [[alternative HTML version deleted]]
> >> 
> >> _______________________________________________
> >> Bioc-devel at r-project.org mailing list
> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel <https://stat.ethz.ch/mailman/listinfo/bioc-devel>
> 
> 
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> 
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