[Bioc-devel] Upstream permission denied

Mon Sep 11 20:01:16 CEST 2017

Hi

Your key will be added in the next run of our script. You can change your GitHub keys, our script will take in the new one, and you don’t have to resubmit on the google-form.

It is run manually at the moment at noon EST everyday.

Nitesh 
> On Sep 11, 2017, at 1:12 PM, Vladimir Kiselev <vladimir.yu.kiselev at gmail.com> wrote:
> 
> Thanks Simina,
> 
> I think I've done all the steps described there before and was able to push
> to upstream. I can't do it anymore and try to figure out why.
> 
> Could anyone else please help?
> 
> Cheers,
> Vlad
> 
> On Mon, 11 Sep 2017, 18:03 Simina Boca <smb310 at georgetown.edu> wrote:
> 
>> Hi, Simina.
>> 
>> Take a look at the FAQ, #3, here:
>> 
>> http://bioconductor.org/developers/how-to/git/faq/
>> 
>> Have you submitted an SSH key somehow?
>> 
>> 
>>> 
>>> Am I missing something here? Alternatively, I suppose I can just make the
>>> changes I want and simply open another issue, although it would be nice to
>>> have an easy to sync it with what is already on Bioconductor.
>>> 
>> 
>> When everything is working, you will "own" the bioconductor git repo, so
>> working it will be roughly equivalent to working with github. Opening an
>> issue on the package submission repo will not get you what you want and is
>> only for new packages.
>> 
>> Sean
>> 
>> 
>> On Mon, Sep 11, 2017 at 1:01 PM, Vladimir Kiselev <
>> vladimir.yu.kiselev at gmail.com> wrote:
>> 
>>> Hi Simina,
>>> 
>>> Thanks for your quick reply, but it looks like to forgot to paste your
>>> response from Sean (at least I couldn't find it in your email).
>>> 
>>> Cheers,
>>> Vlad
>>> 
>>> On Mon, Sep 11, 2017 at 5:58 PM Simina Boca <smb310 at georgetown.edu>
>>> wrote:
>>> 
>>>> Hi Vladimir,
>>>> This seems like the same error I was getting. Here is the helpful advice
>>>> I got from Sean:
>>>> 
>>>> Hi, Simina.
>>>> 
>>>> On Mon, Sep 11, 2017 at 12:55 PM, Vladimir Kiselev <
>>>> vladimir.yu.kiselev at gmail.com> wrote:
>>>> 
>>>>> Hello,
>>>>> 
>>>>> I am trying to push a new version of my package to git.bioconductor.org.
>>>>> I
>>>>> was able to do that in the past. But I've recently changed my public key
>>>>> and not sure whether this causes a problem. However, I can see my new
>>>>> public key here - https://github.com/wikiselev.keys - and it is the
>>>>> first
>>>>> one in the list.
>>>>> 
>>>>> When I look at the remote I can see git.bioconductor.org there but
>>>>> when I
>>>>> try to push to upstream I get an error:
>>>>> 
>>>>> git remote -v
>>>>> origin  git at github.com:hemberg-lab/scmap.git (fetch)
>>>>> origin  git at github.com:hemberg-lab/scmap.git (push)
>>>>> upstream        git at git.bioconductor.org:packages/scmap.git (fetch)
>>>>> upstream        git at git.bioconductor.org:packages/scmap.git (push)
>>>>> 
>>>>> git push origin master
>>>>> Everything up-to-date
>>>>> 
>>>>> git push upstream master
>>>>> Permission denied (publickey).
>>>>> fatal: Could not read from remote repository.
>>>>> Please make sure you have the correct access rights
>>>>> and the repository exists.
>>>>> 
>>>>> Could anyone please help?
>>>>> Many thanks in advance,
>>>>> Kind regards,
>>>>> Vladimir
>>>>> 
>>>> --
>>>>> http://genat.uk
>>>>> 
>>>>>        [[alternative HTML version deleted]]
>>>>> 
>>>>> _______________________________________________
>>>>> Bioc-devel at r-project.org mailing list
>>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>>> 
>>>> 
>>>> 
>>>> 
>>>> --
>>>> Simina M. Boca
>>>> Assistant Professor
>>>> Innovation Center for Biomedical Informatics  (ICBI)
>>>> Department of Oncology | Georgetown University Medical Center
>>>> Department of Biostatistics, Bioinformatics and Biomathematics |
>>>> Georgetown University Medical Center
>>>> Cancer Prevention and Control Program | Lombardi Comprehensive Cancer
>>>> Center
>>>> 
>>>> 2115 Wisconsin Ave NW, Suite 110
>>>> <https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g>
>>>> Washington, DC 20007
>>>> <https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g>
>>>> Phone: (202) 687-1545
>>>> Fax: (202) 687-5011
>>>> http://icbi.georgetown.edu/boca
>>>> 
>>>> 
>>>> On Mon, Sep 11, 2017 at 12:55 PM, Vladimir Kiselev <
>>>> vladimir.yu.kiselev at gmail.com> wrote:
>>>> 
>>>>> Hello,
>>>>> 
>>>>> I am trying to push a new version of my package to git.bioconductor.org.
>>>>> I
>>>>> was able to do that in the past. But I've recently changed my public key
>>>>> and not sure whether this causes a problem. However, I can see my new
>>>>> public key here - https://github.com/wikiselev.keys - and it is the
>>>>> first
>>>>> one in the list.
>>>>> 
>>>>> When I look at the remote I can see git.bioconductor.org there but
>>>>> when I
>>>>> try to push to upstream I get an error:
>>>>> 
>>>>> git remote -v
>>>>> origin  git at github.com:hemberg-lab/scmap.git (fetch)
>>>>> origin  git at github.com:hemberg-lab/scmap.git (push)
>>>>> upstream        git at git.bioconductor.org:packages/scmap.git (fetch)
>>>>> upstream        git at git.bioconductor.org:packages/scmap.git (push)
>>>>> 
>>>>> git push origin master
>>>>> Everything up-to-date
>>>>> 
>>>>> git push upstream master
>>>>> Permission denied (publickey).
>>>>> fatal: Could not read from remote repository.
>>>>> Please make sure you have the correct access rights
>>>>> and the repository exists.
>>>>> 
>>>>> Could anyone please help?
>>>>> Many thanks in advance,
>>>>> Kind regards,
>>>>> Vladimir
>>>>> 
>>>> --
>>>>> http://genat.uk
>>>>> 
>>>>>        [[alternative HTML version deleted]]
>>>>> 
>>>>> _______________________________________________
>>>>> Bioc-devel at r-project.org mailing list
>>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>>> 
>>>> 
>>>> 
>>>> 
>>>> --
>>>> Simina M. Boca
>>>> Assistant Professor
>>>> Innovation Center for Biomedical Informatics  (ICBI)
>>>> Department of Oncology | Georgetown University Medical Center
>>>> Department of Biostatistics, Bioinformatics and Biomathematics |
>>>> Georgetown University Medical Center
>>>> Cancer Prevention and Control Program | Lombardi Comprehensive Cancer
>>>> Center
>>>> 
>>>> 2115 Wisconsin Ave NW, Suite 110
>>>> <https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g>
>>>> Washington, DC 20007
>>>> <https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g>
>>>> Phone: (202) 687-1545
>>>> Fax: (202) 687-5011
>>>> http://icbi.georgetown.edu/boca
>>>> 
>>>> 
>>> --
>>> http://genat.uk
>>> 
>> 
>> 
>> 
>> --
>> Simina M. Boca
>> Assistant Professor
>> Innovation Center for Biomedical Informatics  (ICBI)
>> Department of Oncology | Georgetown University Medical Center
>> Department of Biostatistics, Bioinformatics and Biomathematics |
>> Georgetown University Medical Center
>> Cancer Prevention and Control Program | Lombardi Comprehensive Cancer
>> Center
>> 
>> 2115 Wisconsin Ave NW, Suite 110
>> Washington, DC 20007
>> Phone: (202) 687-1545
>> Fax: (202) 687-5011
>> http://icbi.georgetown.edu/boca
>> 
>> 
> -- 
> http://genat.uk
> 
> 	[[alternative HTML version deleted]]
> 
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel

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