[Bioc-devel] Upstream permission denied

Mon Sep 11 19:12:22 CEST 2017

Thanks Simina,

I think I've done all the steps described there before and was able to push
to upstream. I can't do it anymore and try to figure out why.

Could anyone else please help?

Cheers,
Vlad

On Mon, 11 Sep 2017, 18:03 Simina Boca <smb310 at georgetown.edu> wrote:

> Hi, Simina.
>
> Take a look at the FAQ, #3, here:
>
> http://bioconductor.org/developers/how-to/git/faq/
>
> Have you submitted an SSH key somehow?
>
>
>>
>> Am I missing something here? Alternatively, I suppose I can just make the
>> changes I want and simply open another issue, although it would be nice to
>> have an easy to sync it with what is already on Bioconductor.
>>
>
> When everything is working, you will "own" the bioconductor git repo, so
> working it will be roughly equivalent to working with github. Opening an
> issue on the package submission repo will not get you what you want and is
> only for new packages.
>
> Sean
>
>
> On Mon, Sep 11, 2017 at 1:01 PM, Vladimir Kiselev <
> vladimir.yu.kiselev at gmail.com> wrote:
>
>> Hi Simina,
>>
>> Thanks for your quick reply, but it looks like to forgot to paste your
>> response from Sean (at least I couldn't find it in your email).
>>
>> Cheers,
>> Vlad
>>
>> On Mon, Sep 11, 2017 at 5:58 PM Simina Boca <smb310 at georgetown.edu>
>> wrote:
>>
>>> Hi Vladimir,
>>> This seems like the same error I was getting. Here is the helpful advice
>>> I got from Sean:
>>>
>>> Hi, Simina.
>>>
>>> On Mon, Sep 11, 2017 at 12:55 PM, Vladimir Kiselev <
>>> vladimir.yu.kiselev at gmail.com> wrote:
>>>
>>>> Hello,
>>>>
>>>> I am trying to push a new version of my package to git.bioconductor.org.
>>>> I
>>>> was able to do that in the past. But I've recently changed my public key
>>>> and not sure whether this causes a problem. However, I can see my new
>>>> public key here - https://github.com/wikiselev.keys - and it is the
>>>> first
>>>> one in the list.
>>>>
>>>> When I look at the remote I can see git.bioconductor.org there but
>>>> when I
>>>> try to push to upstream I get an error:
>>>>
>>>> git remote -v
>>>> origin  git at github.com:hemberg-lab/scmap.git (fetch)
>>>> origin  git at github.com:hemberg-lab/scmap.git (push)
>>>> upstream        git at git.bioconductor.org:packages/scmap.git (fetch)
>>>> upstream        git at git.bioconductor.org:packages/scmap.git (push)
>>>>
>>>> git push origin master
>>>> Everything up-to-date
>>>>
>>>> git push upstream master
>>>> Permission denied (publickey).
>>>> fatal: Could not read from remote repository.
>>>> Please make sure you have the correct access rights
>>>> and the repository exists.
>>>>
>>>> Could anyone please help?
>>>> Many thanks in advance,
>>>> Kind regards,
>>>> Vladimir
>>>>
>>> --
>>>> http://genat.uk
>>>>
>>>>         [[alternative HTML version deleted]]
>>>>
>>>> _______________________________________________
>>>> Bioc-devel at r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>>
>>>
>>>
>>>
>>> --
>>> Simina M. Boca
>>> Assistant Professor
>>> Innovation Center for Biomedical Informatics  (ICBI)
>>> Department of Oncology | Georgetown University Medical Center
>>> Department of Biostatistics, Bioinformatics and Biomathematics |
>>> Georgetown University Medical Center
>>> Cancer Prevention and Control Program | Lombardi Comprehensive Cancer
>>> Center
>>>
>>> 2115 Wisconsin Ave NW, Suite 110
>>> <https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g>
>>> Washington, DC 20007
>>> <https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g>
>>> Phone: (202) 687-1545
>>> Fax: (202) 687-5011
>>> http://icbi.georgetown.edu/boca
>>>
>>>
>>> On Mon, Sep 11, 2017 at 12:55 PM, Vladimir Kiselev <
>>> vladimir.yu.kiselev at gmail.com> wrote:
>>>
>>>> Hello,
>>>>
>>>> I am trying to push a new version of my package to git.bioconductor.org.
>>>> I
>>>> was able to do that in the past. But I've recently changed my public key
>>>> and not sure whether this causes a problem. However, I can see my new
>>>> public key here - https://github.com/wikiselev.keys - and it is the
>>>> first
>>>> one in the list.
>>>>
>>>> When I look at the remote I can see git.bioconductor.org there but
>>>> when I
>>>> try to push to upstream I get an error:
>>>>
>>>> git remote -v
>>>> origin  git at github.com:hemberg-lab/scmap.git (fetch)
>>>> origin  git at github.com:hemberg-lab/scmap.git (push)
>>>> upstream        git at git.bioconductor.org:packages/scmap.git (fetch)
>>>> upstream        git at git.bioconductor.org:packages/scmap.git (push)
>>>>
>>>> git push origin master
>>>> Everything up-to-date
>>>>
>>>> git push upstream master
>>>> Permission denied (publickey).
>>>> fatal: Could not read from remote repository.
>>>> Please make sure you have the correct access rights
>>>> and the repository exists.
>>>>
>>>> Could anyone please help?
>>>> Many thanks in advance,
>>>> Kind regards,
>>>> Vladimir
>>>>
>>> --
>>>> http://genat.uk
>>>>
>>>>         [[alternative HTML version deleted]]
>>>>
>>>> _______________________________________________
>>>> Bioc-devel at r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>>
>>>
>>>
>>>
>>> --
>>> Simina M. Boca
>>> Assistant Professor
>>> Innovation Center for Biomedical Informatics  (ICBI)
>>> Department of Oncology | Georgetown University Medical Center
>>> Department of Biostatistics, Bioinformatics and Biomathematics |
>>> Georgetown University Medical Center
>>> Cancer Prevention and Control Program | Lombardi Comprehensive Cancer
>>> Center
>>>
>>> 2115 Wisconsin Ave NW, Suite 110
>>> <https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g>
>>> Washington, DC 20007
>>> <https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g>
>>> Phone: (202) 687-1545
>>> Fax: (202) 687-5011
>>> http://icbi.georgetown.edu/boca
>>>
>>>
>> --
>> http://genat.uk
>>
>
>
>
> --
> Simina M. Boca
> Assistant Professor
> Innovation Center for Biomedical Informatics  (ICBI)
> Department of Oncology | Georgetown University Medical Center
> Department of Biostatistics, Bioinformatics and Biomathematics |
> Georgetown University Medical Center
> Cancer Prevention and Control Program | Lombardi Comprehensive Cancer
> Center
>
> 2115 Wisconsin Ave NW, Suite 110
> Washington, DC 20007
> Phone: (202) 687-1545
> Fax: (202) 687-5011
> http://icbi.georgetown.edu/boca
>
>
-- 
http://genat.uk

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