[Bioc-devel] Upstream permission denied

[Simina Boca]

Hi, Simina.

Take a look at the FAQ, #3, here:

http://bioconductor.org/developers/how-to/git/faq/

Have you submitted an SSH key somehow?


>
> Am I missing something here? Alternatively, I suppose I can just make the
> changes I want and simply open another issue, although it would be nice to
> have an easy to sync it with what is already on Bioconductor.
>

When everything is working, you will "own" the bioconductor git repo, so
working it will be roughly equivalent to working with github. Opening an
issue on the package submission repo will not get you what you want and is
only for new packages.

Sean


On Mon, Sep 11, 2017 at 1:01 PM, Vladimir Kiselev <
vladimir.yu.kiselev at gmail.com> wrote:

> Hi Simina,
>
> Thanks for your quick reply, but it looks like to forgot to paste your
> response from Sean (at least I couldn't find it in your email).
>
> Cheers,
> Vlad
>
> On Mon, Sep 11, 2017 at 5:58 PM Simina Boca <smb310 at georgetown.edu> wrote:
>
>> Hi Vladimir,
>> This seems like the same error I was getting. Here is the helpful advice
>> I got from Sean:
>>
>> Hi, Simina.
>>
>> On Mon, Sep 11, 2017 at 12:55 PM, Vladimir Kiselev <
>> vladimir.yu.kiselev at gmail.com> wrote:
>>
>>> Hello,
>>>
>>> I am trying to push a new version of my package to git.bioconductor.org.
>>> I
>>> was able to do that in the past. But I've recently changed my public key
>>> and not sure whether this causes a problem. However, I can see my new
>>> public key here - https://github.com/wikiselev.keys - and it is the
>>> first
>>> one in the list.
>>>
>>> When I look at the remote I can see git.bioconductor.org there but when
>>> I
>>> try to push to upstream I get an error:
>>>
>>> git remote -v
>>> origin  git at github.com:hemberg-lab/scmap.git (fetch)
>>> origin  git at github.com:hemberg-lab/scmap.git (push)
>>> upstream        git at git.bioconductor.org:packages/scmap.git (fetch)
>>> upstream        git at git.bioconductor.org:packages/scmap.git (push)
>>>
>>> git push origin master
>>> Everything up-to-date
>>>
>>> git push upstream master
>>> Permission denied (publickey).
>>> fatal: Could not read from remote repository.
>>> Please make sure you have the correct access rights
>>> and the repository exists.
>>>
>>> Could anyone please help?
>>> Many thanks in advance,
>>> Kind regards,
>>> Vladimir
>>>
>> --
>>> http://genat.uk
>>>
>>>         [[alternative HTML version deleted]]
>>>
>>> _______________________________________________
>>> Bioc-devel at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>
>>
>>
>>
>> --
>> Simina M. Boca
>> Assistant Professor
>> Innovation Center for Biomedical Informatics  (ICBI)
>> Department of Oncology | Georgetown University Medical Center
>> Department of Biostatistics, Bioinformatics and Biomathematics |
>> Georgetown University Medical Center
>> Cancer Prevention and Control Program | Lombardi Comprehensive Cancer
>> Center
>>
>> 2115 Wisconsin Ave NW, Suite 110
>> <https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g>
>> Washington, DC 20007
>> <https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g>
>> Phone: (202) 687-1545
>> Fax: (202) 687-5011
>> http://icbi.georgetown.edu/boca
>>
>>
>> On Mon, Sep 11, 2017 at 12:55 PM, Vladimir Kiselev <
>> vladimir.yu.kiselev at gmail.com> wrote:
>>
>>> Hello,
>>>
>>> I am trying to push a new version of my package to git.bioconductor.org.
>>> I
>>> was able to do that in the past. But I've recently changed my public key
>>> and not sure whether this causes a problem. However, I can see my new
>>> public key here - https://github.com/wikiselev.keys - and it is the
>>> first
>>> one in the list.
>>>
>>> When I look at the remote I can see git.bioconductor.org there but when
>>> I
>>> try to push to upstream I get an error:
>>>
>>> git remote -v
>>> origin  git at github.com:hemberg-lab/scmap.git (fetch)
>>> origin  git at github.com:hemberg-lab/scmap.git (push)
>>> upstream        git at git.bioconductor.org:packages/scmap.git (fetch)
>>> upstream        git at git.bioconductor.org:packages/scmap.git (push)
>>>
>>> git push origin master
>>> Everything up-to-date
>>>
>>> git push upstream master
>>> Permission denied (publickey).
>>> fatal: Could not read from remote repository.
>>> Please make sure you have the correct access rights
>>> and the repository exists.
>>>
>>> Could anyone please help?
>>> Many thanks in advance,
>>> Kind regards,
>>> Vladimir
>>>
>> --
>>> http://genat.uk
>>>
>>>         [[alternative HTML version deleted]]
>>>
>>> _______________________________________________
>>> Bioc-devel at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>
>>
>>
>>
>> --
>> Simina M. Boca
>> Assistant Professor
>> Innovation Center for Biomedical Informatics  (ICBI)
>> Department of Oncology | Georgetown University Medical Center
>> Department of Biostatistics, Bioinformatics and Biomathematics |
>> Georgetown University Medical Center
>> Cancer Prevention and Control Program | Lombardi Comprehensive Cancer
>> Center
>>
>> 2115 Wisconsin Ave NW, Suite 110
>> <https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g>
>> Washington, DC 20007
>> <https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g>
>> Phone: (202) 687-1545
>> Fax: (202) 687-5011
>> http://icbi.georgetown.edu/boca
>>
>>
> --
> http://genat.uk
>



-- 
Simina M. Boca
Assistant Professor
Innovation Center for Biomedical Informatics  (ICBI)
Department of Oncology | Georgetown University Medical Center
Department of Biostatistics, Bioinformatics and Biomathematics | Georgetown
University Medical Center
Cancer Prevention and Control Program | Lombardi Comprehensive Cancer Center

2115 Wisconsin Ave NW, Suite 110
Washington, DC 20007
Phone: (202) 687-1545
Fax: (202) 687-5011
http://icbi.georgetown.edu/boca

	[[alternative HTML version deleted]]