[Bioc-devel] Upstream permission denied
Vladimir Kiselev
vladimir.yu.kiselev at gmail.com
Mon Sep 11 20:31:56 CEST 2017
Hi Nitesh,
Many thanks, I will check it in a couple of days.
Cheers,
Vlad
On Mon, 11 Sep 2017, 19:01 Turaga, Nitesh <Nitesh.Turaga at roswellpark.org>
wrote:
> Hi
>
> Your key will be added in the next run of our script. You can change your
> GitHub keys, our script will take in the new one, and you don’t have to
> resubmit on the google-form.
>
> It is run manually at the moment at noon EST everyday.
>
> Nitesh
> > On Sep 11, 2017, at 1:12 PM, Vladimir Kiselev <
> vladimir.yu.kiselev at gmail.com> wrote:
> >
> > Thanks Simina,
> >
> > I think I've done all the steps described there before and was able to
> push
> > to upstream. I can't do it anymore and try to figure out why.
> >
> > Could anyone else please help?
> >
> > Cheers,
> > Vlad
> >
> > On Mon, 11 Sep 2017, 18:03 Simina Boca <smb310 at georgetown.edu> wrote:
> >
> >> Hi, Simina.
> >>
> >> Take a look at the FAQ, #3, here:
> >>
> >> http://bioconductor.org/developers/how-to/git/faq/
> >>
> >> Have you submitted an SSH key somehow?
> >>
> >>
> >>>
> >>> Am I missing something here? Alternatively, I suppose I can just make
> the
> >>> changes I want and simply open another issue, although it would be
> nice to
> >>> have an easy to sync it with what is already on Bioconductor.
> >>>
> >>
> >> When everything is working, you will "own" the bioconductor git repo, so
> >> working it will be roughly equivalent to working with github. Opening an
> >> issue on the package submission repo will not get you what you want and
> is
> >> only for new packages.
> >>
> >> Sean
> >>
> >>
> >> On Mon, Sep 11, 2017 at 1:01 PM, Vladimir Kiselev <
> >> vladimir.yu.kiselev at gmail.com> wrote:
> >>
> >>> Hi Simina,
> >>>
> >>> Thanks for your quick reply, but it looks like to forgot to paste your
> >>> response from Sean (at least I couldn't find it in your email).
> >>>
> >>> Cheers,
> >>> Vlad
> >>>
> >>> On Mon, Sep 11, 2017 at 5:58 PM Simina Boca <smb310 at georgetown.edu>
> >>> wrote:
> >>>
> >>>> Hi Vladimir,
> >>>> This seems like the same error I was getting. Here is the helpful
> advice
> >>>> I got from Sean:
> >>>>
> >>>> Hi, Simina.
> >>>>
> >>>> On Mon, Sep 11, 2017 at 12:55 PM, Vladimir Kiselev <
> >>>> vladimir.yu.kiselev at gmail.com> wrote:
> >>>>
> >>>>> Hello,
> >>>>>
> >>>>> I am trying to push a new version of my package to
> git.bioconductor.org.
> >>>>> I
> >>>>> was able to do that in the past. But I've recently changed my public
> key
> >>>>> and not sure whether this causes a problem. However, I can see my new
> >>>>> public key here - https://github.com/wikiselev.keys - and it is the
> >>>>> first
> >>>>> one in the list.
> >>>>>
> >>>>> When I look at the remote I can see git.bioconductor.org there but
> >>>>> when I
> >>>>> try to push to upstream I get an error:
> >>>>>
> >>>>> git remote -v
> >>>>> origin git at github.com:hemberg-lab/scmap.git (fetch)
> >>>>> origin git at github.com:hemberg-lab/scmap.git (push)
> >>>>> upstream git at git.bioconductor.org:packages/scmap.git (fetch)
> >>>>> upstream git at git.bioconductor.org:packages/scmap.git (push)
> >>>>>
> >>>>> git push origin master
> >>>>> Everything up-to-date
> >>>>>
> >>>>> git push upstream master
> >>>>> Permission denied (publickey).
> >>>>> fatal: Could not read from remote repository.
> >>>>> Please make sure you have the correct access rights
> >>>>> and the repository exists.
> >>>>>
> >>>>> Could anyone please help?
> >>>>> Many thanks in advance,
> >>>>> Kind regards,
> >>>>> Vladimir
> >>>>>
> >>>> --
> >>>>> http://genat.uk
> >>>>>
> >>>>> [[alternative HTML version deleted]]
> >>>>>
> >>>>> _______________________________________________
> >>>>> Bioc-devel at r-project.org mailing list
> >>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >>>>>
> >>>>
> >>>>
> >>>>
> >>>> --
> >>>> Simina M. Boca
> >>>> Assistant Professor
> >>>> Innovation Center for Biomedical Informatics (ICBI)
> >>>> Department of Oncology | Georgetown University Medical Center
> >>>> Department of Biostatistics, Bioinformatics and Biomathematics |
> >>>> Georgetown University Medical Center
> >>>> Cancer Prevention and Control Program | Lombardi Comprehensive Cancer
> >>>> Center
> >>>>
> >>>> 2115 Wisconsin Ave NW, Suite 110
> >>>> <
> https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g
> >
> >>>> Washington, DC 20007
> >>>> <
> https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g
> >
> >>>> Phone: (202) 687-1545
> >>>> Fax: (202) 687-5011
> >>>> http://icbi.georgetown.edu/boca
> >>>>
> >>>>
> >>>> On Mon, Sep 11, 2017 at 12:55 PM, Vladimir Kiselev <
> >>>> vladimir.yu.kiselev at gmail.com> wrote:
> >>>>
> >>>>> Hello,
> >>>>>
> >>>>> I am trying to push a new version of my package to
> git.bioconductor.org.
> >>>>> I
> >>>>> was able to do that in the past. But I've recently changed my public
> key
> >>>>> and not sure whether this causes a problem. However, I can see my new
> >>>>> public key here - https://github.com/wikiselev.keys - and it is the
> >>>>> first
> >>>>> one in the list.
> >>>>>
> >>>>> When I look at the remote I can see git.bioconductor.org there but
> >>>>> when I
> >>>>> try to push to upstream I get an error:
> >>>>>
> >>>>> git remote -v
> >>>>> origin git at github.com:hemberg-lab/scmap.git (fetch)
> >>>>> origin git at github.com:hemberg-lab/scmap.git (push)
> >>>>> upstream git at git.bioconductor.org:packages/scmap.git (fetch)
> >>>>> upstream git at git.bioconductor.org:packages/scmap.git (push)
> >>>>>
> >>>>> git push origin master
> >>>>> Everything up-to-date
> >>>>>
> >>>>> git push upstream master
> >>>>> Permission denied (publickey).
> >>>>> fatal: Could not read from remote repository.
> >>>>> Please make sure you have the correct access rights
> >>>>> and the repository exists.
> >>>>>
> >>>>> Could anyone please help?
> >>>>> Many thanks in advance,
> >>>>> Kind regards,
> >>>>> Vladimir
> >>>>>
> >>>> --
> >>>>> http://genat.uk
> >>>>>
> >>>>> [[alternative HTML version deleted]]
> >>>>>
> >>>>> _______________________________________________
> >>>>> Bioc-devel at r-project.org mailing list
> >>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >>>>>
> >>>>
> >>>>
> >>>>
> >>>> --
> >>>> Simina M. Boca
> >>>> Assistant Professor
> >>>> Innovation Center for Biomedical Informatics (ICBI)
> >>>> Department of Oncology | Georgetown University Medical Center
> >>>> Department of Biostatistics, Bioinformatics and Biomathematics |
> >>>> Georgetown University Medical Center
> >>>> Cancer Prevention and Control Program | Lombardi Comprehensive Cancer
> >>>> Center
> >>>>
> >>>> 2115 Wisconsin Ave NW, Suite 110
> >>>> <
> https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g
> >
> >>>> Washington, DC 20007
> >>>> <
> https://maps.google.com/?q=2115+Wisconsin+Ave+NW,+Suite+110Washington,+DC+20007&entry=gmail&source=g
> >
> >>>> Phone: (202) 687-1545
> >>>> Fax: (202) 687-5011
> >>>> http://icbi.georgetown.edu/boca
> >>>>
> >>>>
> >>> --
> >>> http://genat.uk
> >>>
> >>
> >>
> >>
> >> --
> >> Simina M. Boca
> >> Assistant Professor
> >> Innovation Center for Biomedical Informatics (ICBI)
> >> Department of Oncology | Georgetown University Medical Center
> >> Department of Biostatistics, Bioinformatics and Biomathematics |
> >> Georgetown University Medical Center
> >> Cancer Prevention and Control Program | Lombardi Comprehensive Cancer
> >> Center
> >>
> >> 2115 Wisconsin Ave NW, Suite 110
> >> Washington, DC 20007
> >> Phone: (202) 687-1545
> >> Fax: (202) 687-5011
> >> http://icbi.georgetown.edu/boca
> >>
> >>
> > --
> > http://genat.uk
> >
> > [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
>
>
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