[Bioc-devel] Package un-deprecation

Mon Oct 30 15:23:15 CET 2017

Once you push a version bump to the git server,  it can take 12-24 hours for the recent build report to reflect the changes.

The changes from Oct 26 are currently reflected on the http://bioconductor.org/checkResults/devel/bioc-LATEST/MAIT/

The changes pushed on the 29 will either be reflected in the report later today or tomorrow depending on the timing of your push compared to the start of our builds for the day.

Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Turaga, Nitesh
Sent: Monday, October 30, 2017 10:15:22 AM
To: sergi.picart at upc.edu
Cc: bioc-devel; Shepherd, Lori
Subject: Re: Package un-deprecation

Hi,

You have to wait till tomorrow to see if you package builds successfully.

Hopefully your package builds, and there is a landing page.

 Nitesh

> On Oct 30, 2017, at 6:57 AM, sergi.picart at upc.edu wrote:
>
> Dear Nitesh,
>
> We were able to fix the error on MAIT under the bioc-devel official docker.
> We pushed upstream two days ago to meet the deadline, but the system has not seen the changes and no build has been issued since then.
> What should we do?
>
> Thank you for your help,
>
> Quoting sergi.picart at upc.edu:
>
>> Dear Nitesh,
>>
>> The build has not been triggered yet, is everything correct?
>>
>> Thank you,
>>
>> Quoting "Turaga, Nitesh" <Nitesh.Turaga at roswellpark.org>:
>>
>>> The builds are “nightly builds” i.e they trigger in the evening time EST. Please wait till tomorrow to see your build report.
>>>
>>>
>>>> On Oct 26, 2017, at 11:16 AM, sergi.picart at upc.edu wrote:
>>>>
>>>> We have bumped the version and removed the ^M characters.
>>>>
>>>> This did not trigger the build by the time I am writing now, though.
>>>>
>>>>
>>>> Thank you,
>>>>
>>>> Quoting "Turaga, Nitesh" <Nitesh.Turaga at roswellpark.org>:
>>>>
>>>>> Please issue another version bump.
>>>>>
>>>>> It might also help if you removed the ^M characters after the version bump.
>>>>>
>>>>>> On Oct 26, 2017, at 10:37 AM, sergi.picart at upc.edu wrote:
>>>>>>
>>>>>> Yes, as far as I know.
>>>>>>
>>>>>> Running:
>>>>>>
>>>>>> git clone git at git.bioconductor.org:packages/MAIT
>>>>>>
>>>>>> and showing the DESCRIPTION file yields to
>>>>>>
>>>>>> Version: 1.11.3
>>>>>>
>>>>>> Is this right? Thank you,
>>>>>>
>>>>>> Quoting "Turaga, Nitesh" <Nitesh.Turaga at roswellpark.org>:
>>>>>>
>>>>>>> Did you push to upstream i.e git at git.bioconductor.org?
>>>>>>>
>>>>>>> And did you bump the version?
>>>>>>>
>>>>>>>> On Oct 26, 2017, at 9:06 AM, sergi.picart at upc.edu wrote:
>>>>>>>>
>>>>>>>> Dear Nitesh,
>>>>>>>>
>>>>>>>> We have pushed one changeset to git at git.bioconductor.org:packages/MAIT, but I cannot see an updated build report on http://bioconductor.org/checkResults/devel/bioc-LATEST/MAIT/
>>>>>>>>
>>>>>>>> Are we doing something wrong or is it a matter of time that it builds automatically?
>>>>>>>>
>>>>>>>> Thank you,
>>>>>>>>
>>>>>>>> Quoting "Turaga, Nitesh" <Nitesh.Turaga at roswellpark.org>:
>>>>>>>>
>>>>>>>>> Hi,
>>>>>>>>>
>>>>>>>>> Your package MAIT still fails the builds for the devel branch.
>>>>>>>>>
>>>>>>>>> Please check it as soon as possible.
>>>>>>>>>
>>>>>>>>> http://bioconductor.org/checkResults/devel/bioc-LATEST/MAIT/
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> This needs to be resolved before 29th October.
>>>>>>>>>
>>>>>>>>> Best,
>>>>>>>>>
>>>>>>>>> Nitesh
>>>>>>>>>
>>>>>>>>>> On Sep 29, 2017, at 10:39 AM, sergi.picart at upc.edu wrote:
>>>>>>>>>>
>>>>>>>>>> Dear Bioconductor team,
>>>>>>>>>>
>>>>>>>>>> Our lab is in charge of maintaining the MAIT package.
>>>>>>>>>> MAIT is about to get deprecated due to an error in its vignette.
>>>>>>>>>> We have a fix for it, and would also add a new author/maintainer to patch it.
>>>>>>>>>> Which steps do we need to follow?
>>>>>>>>>>
>>>>>>>>>> Thank you for your help,
>>>>>>>>>>
>>>>>>>>>> Sergio
>>>>>>>>>>
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