[Bioc-devel] Package un-deprecation

[sergi.picart at upc.edu]

  Dear Lori and Nitesh, 

The build of the MAIT package is successful now, so we hope everything  
runs smoothly. 

Thank you, 

Quoting "Shepherd, Lori" <Lori.Shepherd at roswellpark.org>:

> Once you push a version bump to the git server,  it can take 12-24  
> hours for the recent build report to reflect the changes. 
>
>     The changes from Oct 26 are currently reflected on  
> the http://bioconductor.org/checkResults/devel/bioc-LATEST/MAIT/
>
>     The changes pushed on the 29 will either be reflected in the  
> report later today or tomorrow depending on the timing of your push  
> compared to the start of our builds for the day. 
>
>      
>
>      
>
>       Lori Shepherd
>
>       Bioconductor Core Team
>
>       Roswell Park Cancer Institute
>
>       Department of Biostatistics & Bioinformatics
>
>       Elm & Carlton Streets
>
>       Buffalo, New York 14263
>
> -------------------------
>    FROM: Turaga, Nitesh
> SENT: Monday, October 30, 2017 10:15:22 AM
> TO: sergi.picart at upc.edu
> CC: bioc-devel; Shepherd, Lori
> SUBJECT: Re: Package un-deprecation        
>
>   Hi,
>
> You have to wait till tomorrow to see if you package builds successfully.
>
> Hopefully your package builds, and there is a landing page.
>
>  Nitesh
>
>> On Oct 30, 2017, at 6:57 AM, sergi.picart at upc.edu wrote:
>>
>> Dear Nitesh,
>>
>> We were able to fix the error on MAIT under the bioc-devel official docker.
>> We pushed upstream two days ago to meet the deadline, but the  
>> system has not seen the changes and no build has been issued since  
>> then.
>> What should we do?
>>
>> Thank you for your help,
>>
>> Quoting sergi.picart at upc.edu:
>>
>>> Dear Nitesh,
>>>
>>> The build has not been triggered yet, is everything correct?
>>>
>>> Thank you,
>>>
>>> Quoting "Turaga, Nitesh" <Nitesh.Turaga at roswellpark.org>:
>>>
>>>> The builds are “nightly builds” i.e they trigger in the evening  
>>>> time EST. Please wait till tomorrow to see your build report.
>>>>  
>>>>
>>>>> On Oct 26, 2017, at 11:16 AM, sergi.picart at upc.edu wrote:
>>>>>
>>>>> We have bumped the version and removed the ^M characters.
>>>>>
>>>>> This did not trigger the build by the time I am writing now, though.
>>>>>
>>>>>
>>>>> Thank you,
>>>>>
>>>>> Quoting "Turaga, Nitesh" <Nitesh.Turaga at roswellpark.org>:
>>>>>
>>>>>> Please issue another version bump.
>>>>>>
>>>>>> It might also help if you removed the ^M characters after the  
>>>>>> version bump.
>>>>>>
>>>>>>> On Oct 26, 2017, at 10:37 AM, sergi.picart at upc.edu wrote:
>>>>>>>
>>>>>>> Yes, as far as I know.
>>>>>>>
>>>>>>> Running:
>>>>>>>
>>>>>>> git clone git at git.bioconductor.org:packages/MAIT
>>>>>>>
>>>>>>> and showing the DESCRIPTION file yields to
>>>>>>>
>>>>>>> Version: 1.11.3
>>>>>>>
>>>>>>> Is this right? Thank you,
>>>>>>>
>>>>>>> Quoting "Turaga, Nitesh" <Nitesh.Turaga at roswellpark.org>:
>>>>>>>
>>>>>>>> Did you push to upstream i.e git at git.bioconductor.org?
>>>>>>>>
>>>>>>>> And did you bump the version?
>>>>>>>>
>>>>>>>>> On Oct 26, 2017, at 9:06 AM, sergi.picart at upc.edu wrote:
>>>>>>>>>
>>>>>>>>> Dear Nitesh,
>>>>>>>>>
>>>>>>>>> We have pushed one changeset to  
>>>>>>>>> git at git.bioconductor.org:packages/MAIT, but I cannot see an  
>>>>>>>>> updated build report on  
>>>>>>>>> http://bioconductor.org/checkResults/devel/bioc-LATEST/MAIT/
>>>>>>>>>
>>>>>>>>> Are we doing something wrong or is it a matter of time that  
>>>>>>>>> it builds automatically?
>>>>>>>>>
>>>>>>>>> Thank you,
>>>>>>>>>
>>>>>>>>> Quoting "Turaga, Nitesh" <Nitesh.Turaga at roswellpark.org>:
>>>>>>>>>
>>>>>>>>>> Hi,
>>>>>>>>>>
>>>>>>>>>> Your package MAIT still fails the builds for the devel branch.
>>>>>>>>>>
>>>>>>>>>> Please check it as soon as possible.
>>>>>>>>>>
>>>>>>>>>>  http://bioconductor.org/checkResults/devel/bioc-LATEST/MAIT/[1]
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> This needs to be resolved before 29th October.
>>>>>>>>>>
>>>>>>>>>> Best,
>>>>>>>>>>
>>>>>>>>>> Nitesh
>>>>>>>>>>
>>>>>>>>>>> On Sep 29, 2017, at 10:39 AM, sergi.picart at upc.edu wrote:
>>>>>>>>>>>
>>>>>>>>>>> Dear Bioconductor team,
>>>>>>>>>>>
>>>>>>>>>>> Our lab is in charge of maintaining the MAIT package.
>>>>>>>>>>> MAIT is about to get deprecated due to an error in its vignette.
>>>>>>>>>>> We have a fix for it, and would also add a new  
>>>>>>>>>>> author/maintainer to patch it.
>>>>>>>>>>> Which steps do we need to follow?
>>>>>>>>>>>
>>>>>>>>>>> Thank you for your help,
>>>>>>>>>>>
>>>>>>>>>>> Sergio
>>>>>>>>>>>
>>>>>>>>>> This email message may contain legally privileged and/or  
>>>>>>>>>> confidential information.  If you are not the intended  
>>>>>>>>>> recipient(s), or the employee or agent responsible for the  
>>>>>>>>>> delivery of this message to the intended recipient(s), you  
>>>>>>>>>> are hereby notified that any disclosure, copying,  
>>>>>>>>>> distribution, or use of this email message is prohibited.   
>>>>>>>>>> If you have received this message in error, please notify  
>>>>>>>>>> the sender immediately by e-mail and delete this email  
>>>>>>>>>> message from your computer. Thank you.
>>>>>>>> This email message may contain legally privileged and/or  
>>>>>>>> confidential information.  If you are not the intended  
>>>>>>>> recipient(s), or the employee or agent responsible for the  
>>>>>>>> delivery of this message to the intended recipient(s), you  
>>>>>>>> are hereby notified that any disclosure, copying,  
>>>>>>>> distribution, or use of this email message is prohibited.  If  
>>>>>>>> you have received this message in error, please notify the  
>>>>>>>> sender immediately by e-mail and delete this email message  
>>>>>>>> from your computer. Thank you.
>>>>>> This email message may contain legally privileged and/or  
>>>>>> confidential information.  If you are not the intended  
>>>>>> recipient(s), or the employee or agent responsible for the  
>>>>>> delivery of this message to the intended recipient(s), you are  
>>>>>> hereby notified that any disclosure, copying, distribution, or  
>>>>>> use of this email message is prohibited.  If you have received  
>>>>>> this message in error, please notify the sender immediately by  
>>>>>> e-mail and delete this email message from your computer. Thank  
>>>>>> you.
>>>> This email message may contain legally privileged and/or  
>>>> confidential information.  If you are not the intended  
>>>> recipient(s), or the employee or agent responsible for the  
>>>> delivery of this message to the intended recipient(s), you are  
>>>> hereby notified that any disclosure, copying, distribution, or  
>>>> use of this email message is prohibited.  If you have received  
>>>> this message in error, please notify the sender immediately by  
>>>> e-mail and delete this email message from your computer. Thank you.
>>>
>>>  
>>>
>>
>>
>>
>  



Links:
------
[1] http://bioconductor.org/checkResults/devel/bioc-LATEST/MAIT/

	[[alternative HTML version deleted]]