[Bioc-devel] Install directly from the bioconductor git repo?

[Martin Morgan]

On 10/25/2017 02:05 AM, Stian Lågstad wrote:
> Thank you Martin. Are the core packages being kept as Github mirrors?

yes the core packages are maintained as github mirrors. Martin

> 
> On Wed, Oct 25, 2017 at 3:21 AM, Martin Morgan 
> <martin.morgan at roswellpark.org <mailto:martin.morgan at roswellpark.org>> 
> wrote:
> 
>     On 10/24/2017 04:16 PM, Stian Lågstad wrote:
> 
>         Can I install a package directly from a Bioconductor git
>         repository? Like I
>         can for example using devtools and a github repository like this:
>         `install_git("git://github.com/hadley/stringr.git
>         <http://github.com/hadley/stringr.git>")`? What would be the
>         link for a Bioconductor package?
> 
> 
>     install_git("https://git.bioconductor.org/packages/BiocGenerics.git
>     <https://git.bioconductor.org/packages/BiocGenerics.git>")
> 
>     seems to work.
> 
> 
>         Also, can I link directly to a source code file somehow? Like I
>         can with
>         the github repository:
>         https://github.com/tidyverse/stringr/blob/master/R/case.R#L21
>         <https://github.com/tidyverse/stringr/blob/master/R/case.R#L21>
> 
> 
>     no, not at the moment, except of course for packages that are
>     mirrored on github
> 
>     https://github.com/Bioconductor/BiocGenerics/blob/master/DESCRIPTION#L4
>     <https://github.com/Bioconductor/BiocGenerics/blob/master/DESCRIPTION#L4>
> 
>     Martin
> 
> 
>         Thank you.
> 
> 
> 
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> -- 
> Stian Lågstad
> +47 41 80 80 25


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