[Bioc-devel] Install directly from the bioconductor git repo?

[Stian Lågstad]

Thank you Martin. Are the core packages being kept as Github mirrors?

On Wed, Oct 25, 2017 at 3:21 AM, Martin Morgan <
martin.morgan at roswellpark.org> wrote:

> On 10/24/2017 04:16 PM, Stian Lågstad wrote:
>
>> Can I install a package directly from a Bioconductor git repository? Like
>> I
>> can for example using devtools and a github repository like this:
>> `install_git("git://github.com/hadley/stringr.git")`? What would be the
>> link for a Bioconductor package?
>>
>
> install_git("https://git.bioconductor.org/packages/BiocGenerics.git")
>
> seems to work.
>
>
>> Also, can I link directly to a source code file somehow? Like I can with
>> the github repository:
>> https://github.com/tidyverse/stringr/blob/master/R/case.R#L21
>>
>
> no, not at the moment, except of course for packages that are mirrored on
> github
>
>   https://github.com/Bioconductor/BiocGenerics/blob/master/DESCRIPTION#L4
>
> Martin
>
>
>> Thank you.
>>
>>
>
> This email message may contain legally privileged and/or confidential
> information.  If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited.  If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.
>



-- 
Stian Lågstad
+47 41 80 80 25

	[[alternative HTML version deleted]]