[Bioc-devel] Build problem with malbec2

[Hervé Pagès]

Hi Roel,

It looks like Michael fixed rtracklayer yesterday and that
MutationalPatterns 1.2.1 could finally propagate:

 
http://bioconductor.org/checkResults/release/bioc-LATEST/MutationalPatterns/malbec2-buildsrc.html

The landing page should get updated soon:

   http://bioconductor.org/packages/MutationalPatterns

Cheers,
H.


On 05/19/2017 06:34 AM, Janssen-10, R.R.E. wrote:
> Dear Valerie,
>
> Could we maybe do a manual build for the package, so that the bugfixed version can be propagated to users?
>
>
> Kind regards,
> Roel Janssen
>
> ________________________________________
> From: Bioc-devel [bioc-devel-bounces at r-project.org] on behalf of Janssen-10, R.R.E. [R.R.E.Janssen-10 at umcutrecht.nl]
> Sent: Monday, May 15, 2017 3:06 PM
> To: Michael Lawrence; bioc-devel at r-project.org
> Subject: Re: [Bioc-devel] Build problem with malbec2
>
> Dear Michael,
>
> Do you have any indication on when we can expect the fix?
> This is currently keeping Linux users from getting our latest bugfixed version.
>
> Kind regards,
> Roel Janssen
>
> ________________________________________
> From: Bioc-devel [bioc-devel-bounces at r-project.org] on behalf of Janssen-10, R.R.E. [R.R.E.Janssen-10 at umcutrecht.nl]
> Sent: Wednesday, May 10, 2017 3:33 PM
> To: Obenchain, Valerie; bioc-devel at r-project.org
> Cc: Michael Lawrence
> Subject: Re: [Bioc-devel] Build problem with malbec2
>
> Dear Valerie,
>
> Ok.  And thanks Michael, for working on a fix.
>
> Kind regards,
> Roel Janssen
>
>
> From: Obenchain, Valerie [Valerie.Obenchain at RoswellPark.org]
>>
>> Hi Roel,
>>
>> Looks like the problem is in rtracklayer (also red on the release build
>> report). I think Michael is aware of this and a fix will be coming soon.
>>
>> Valerie
>
>> On 05/10/2017 02:23 AM, Janssen-10, R.R.E. wrote:
>>> Dear Bioconductorians,
>>>
>>> Is there something wrong with malbec2, or is there something broken in our package?
>>>
>>> See the build report:
>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_release_bioc-2DLATEST_MutationalPatterns_malbec2-2Dbuildsrc.html&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=MyZsFQqdxhaBUOBrVJIhg41VpaZSbAcH1igpYP6eqtk&s=aZyiKKAhTq_cai7kxgmnhwn_NsQVyH5Zj4r-lFsMngA&e=
>>>
>>> Kind regards,
>>> Roel Janssen
>
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-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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