[Bioc-devel] adding methods to BiocGenerics

[Martin Morgan]

On 05/19/2017 12:14 PM, Michael Lawrence wrote:
> Since SeqArray already imports SummarizedExperiment and
> VariantAnnotation, why can't it just move them to Depends and use
> their generics?

do they need to be moved to Depends? Or simply import the generic export 
the new method(s) (and generic)?

Martin

>
> On Fri, May 19, 2017 at 8:39 AM, Stephanie M. Gogarten
> <sdmorris at u.washington.edu> wrote:
>> Dear Core Team,
>>
>> What do you think about adding the following generics to BiocGenerics?
>>
>> colData
>> rowRanges
>> ref
>> alt
>> qual
>> filt
>> header
>> fixed
>> info
>> geno
>>
>> They are currently defined by both VariantAnnotation/SummarizedExperiment
>> and SeqArray. Given the increasingly widespread use of VCF files, it seems
>> likely that other packages may want to use them in future also.
>>
>> Stephanie
>>
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>
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