[Bioc-devel] adding methods to BiocGenerics

[Michael Lawrence]

Since SeqArray already imports SummarizedExperiment and
VariantAnnotation, why can't it just move them to Depends and use
their generics?

On Fri, May 19, 2017 at 8:39 AM, Stephanie M. Gogarten
<sdmorris at u.washington.edu> wrote:
> Dear Core Team,
>
> What do you think about adding the following generics to BiocGenerics?
>
> colData
> rowRanges
> ref
> alt
> qual
> filt
> header
> fixed
> info
> geno
>
> They are currently defined by both VariantAnnotation/SummarizedExperiment
> and SeqArray. Given the increasingly widespread use of VCF files, it seems
> likely that other packages may want to use them in future also.
>
> Stephanie
>
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