[Bioc-devel] adding methods to BiocGenerics

Michael Lawrence lawrence.michael at gene.com
Fri May 19 21:15:34 CEST 2017


That could work, also.

On Fri, May 19, 2017 at 10:27 AM, Martin Morgan
<martin.morgan at roswellpark.org> wrote:
> On 05/19/2017 12:14 PM, Michael Lawrence wrote:
>>
>> Since SeqArray already imports SummarizedExperiment and
>> VariantAnnotation, why can't it just move them to Depends and use
>> their generics?
>
>
> do they need to be moved to Depends? Or simply import the generic export the
> new method(s) (and generic)?
>
> Martin
>
>>
>> On Fri, May 19, 2017 at 8:39 AM, Stephanie M. Gogarten
>> <sdmorris at u.washington.edu> wrote:
>>>
>>> Dear Core Team,
>>>
>>> What do you think about adding the following generics to BiocGenerics?
>>>
>>> colData
>>> rowRanges
>>> ref
>>> alt
>>> qual
>>> filt
>>> header
>>> fixed
>>> info
>>> geno
>>>
>>> They are currently defined by both VariantAnnotation/SummarizedExperiment
>>> and SeqArray. Given the increasingly widespread use of VCF files, it
>>> seems
>>> likely that other packages may want to use them in future also.
>>>
>>> Stephanie
>>>
>>> _______________________________________________
>>> Bioc-devel at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>
>
> This email message may contain legally privileged and/or...{{dropped:2}}
>
>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel



More information about the Bioc-devel mailing list