[Bioc-devel] Problem to install bioconductor for R devel (3.5)

[Martin Morgan]

On 03/29/2017 12:57 AM, Dan Tenenbaum wrote:
> Don't install R-3.5; install R-3.4 from https://cran.rstudio.com/bin/windows/base/rtest.html

Expanding a little --

R has a yearly release cycle, Bioc a 6 month release cycle

Bioc-devel tries to use the R that will be used when Bioc-devel becomes 
the next Bioc release.

bioc-devel becomes Bioc-3.4 later in April. R-3.4 is the version of R 
that will be in use then.

R-3.4 is only recently available, following the R release schedule 
https://developer.r-project.org/; it is a branch of R-devel, created 
yesterday.

Bioc-devel will CONTINUE TO USE the R-3.4 branch, because R-3.4 will be 
the version of R in use when Bioc-3.5 is released in the fall.

For the next six months Bioc knows nothing about R-devel.

Martin


>
> Dan
>
>
> ----- Original Message -----
>> From: "bioc-devel" <bioc-devel at r-project.org>
>> To: "bioc-devel" <bioc-devel at r-project.org>
>> Sent: Tuesday, March 28, 2017 7:59:57 PM
>> Subject: [Bioc-devel] Problem to install bioconductor for R devel (3.5)
>
>> Hi,
>>
>> I have install development version of r from
>>
>> https://cran.r-project.org/bin/windows/base/rdevel.html
>>
>> But when i have tried to install  Bioconductor, i got following error.
>> Can any one please explain why ?
>>
>> It said "Bioconductor does not yet support R version 3.5.0"  ....but why ??
>>
>> ##################################################################
>>> ## try http:// if https:// URLs are not supported
>>> source("https://bioconductor.org/biocLite.R
>>> ")
>> Bioconductor version 3.5 (BiocInstaller 1.25.3), ?biocLite for help
>> Bioconductor does not yet support R version 3.5.0
>>> biocLite()
>> BioC_mirror:
>> https://bioconductor.org
>> Using Bioconductor 3.5 (BiocInstaller 1.25.3), R Under development (unstable)
>> (2017-03-27 r72423).
>> Installing package(s) ‘Biobase’, ‘IRanges’, ‘AnnotationDbi’
>> also installing the dependency ‘S4Vectors’
>>
>> Warning: unable to access index for repository
>> https://bioconductor.org/packages/3.5/bioc/bin/windows/contrib/3.5:
>> cannot open URL
>> 'https://bioconductor.org/packages/3.5/bioc/bin/windows/contrib/3.5/PACKAGES
>> '
>> Warning: unable to access index for repository
>> https://bioconductor.org/packages/3.5/data/annotation/bin/windows/contrib/3.5:
>> cannot open URL
>> 'https://bioconductor.org/packages/3.5/data/annotation/bin/windows/contrib/3.5/PACKAGES
>> '
>> Warning: unable to access index for repository
>> https://bioconductor.org/packages/3.5/data/experiment/bin/windows/contrib/3.5:
>> cannot open URL
>> 'https://bioconductor.org/packages/3.5/data/experiment/bin/windows/contrib/3.5/PACKAGES
>> '
>> Warning: unable to access index for repository
>> https://bioconductor.org/packages/3.5/extra/bin/windows/contrib/3.5:
>> cannot open URL
>> 'https://bioconductor.org/packages/3.5/extra/bin/windows/contrib/3.5/PACKAGES
>> '
>> Error in readRDS(dest) : unknown input format
>>>
>>
>>
>>
>> Tanvir Ahamed
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
> _______________________________________________
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> https://stat.ethz.ch/mailman/listinfo/bioc-devel
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