[Bioc-devel] Problem to install bioconductor for R devel (3.5)

[Dan Tenenbaum]

Don't install R-3.5; install R-3.4 from https://cran.rstudio.com/bin/windows/base/rtest.html

Dan


----- Original Message -----
> From: "bioc-devel" <bioc-devel at r-project.org>
> To: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Tuesday, March 28, 2017 7:59:57 PM
> Subject: [Bioc-devel] Problem to install bioconductor for R devel (3.5)

> Hi,
>
> I have install development version of r from
>
> https://cran.r-project.org/bin/windows/base/rdevel.html
>
> But when i have tried to install  Bioconductor, i got following error.
> Can any one please explain why ?
>
> It said "Bioconductor does not yet support R version 3.5.0"  ....but why ??
>
> ##################################################################
>> ## try http:// if https:// URLs are not supported
>> source("https://bioconductor.org/biocLite.R
>> ")
> Bioconductor version 3.5 (BiocInstaller 1.25.3), ?biocLite for help
> Bioconductor does not yet support R version 3.5.0
>> biocLite()
> BioC_mirror:
> https://bioconductor.org
> Using Bioconductor 3.5 (BiocInstaller 1.25.3), R Under development (unstable)
> (2017-03-27 r72423).
> Installing package(s) ‘Biobase’, ‘IRanges’, ‘AnnotationDbi’
> also installing the dependency ‘S4Vectors’
>
> Warning: unable to access index for repository
> https://bioconductor.org/packages/3.5/bioc/bin/windows/contrib/3.5:
> cannot open URL
> 'https://bioconductor.org/packages/3.5/bioc/bin/windows/contrib/3.5/PACKAGES
> '
> Warning: unable to access index for repository
> https://bioconductor.org/packages/3.5/data/annotation/bin/windows/contrib/3.5:
> cannot open URL
> 'https://bioconductor.org/packages/3.5/data/annotation/bin/windows/contrib/3.5/PACKAGES
> '
> Warning: unable to access index for repository
> https://bioconductor.org/packages/3.5/data/experiment/bin/windows/contrib/3.5:
> cannot open URL
> 'https://bioconductor.org/packages/3.5/data/experiment/bin/windows/contrib/3.5/PACKAGES
> '
> Warning: unable to access index for repository
> https://bioconductor.org/packages/3.5/extra/bin/windows/contrib/3.5:
> cannot open URL
> 'https://bioconductor.org/packages/3.5/extra/bin/windows/contrib/3.5/PACKAGES
> '
> Error in readRDS(dest) : unknown input format
>>
>
>
>
> Tanvir Ahamed
>
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