[Bioc-devel] Cannot find SummarizedExperiment's function assays()

Marcel Ramos marcel.ramosperez at roswellpark.org
Mon Mar 27 20:26:14 CEST 2017

Hi Sokratis,

You can resolve this issue by moving `SummarizedExperiment` to the 
Suggests field and

including a `library(SummarizedExperiment)` call in your vignette.

Best regards,


On Mon, Mar 27, 2017 at 11:09 AM Sokratis Kariotis 
<s.kariotis at sheffield.ac.uk <mailto:s.kariotis at sheffield.ac.uk>> wrote:


    I have submitted the package pathprintGEOData, which got accepted,
    but the
    build/check report is now producing the following error:

    *Error: processing vignette 'usingPathprintGEOData.Rnw' failed with
    diagnostics:  chunk 1 Error in assays(result) : could not find function

    *assays *is a function from the SummarizedExperiment package which I
    added on my Depends in DESCRIPTION. This error was not present during
    building/checking before this package was accepted. Besides adding
    to my Imports what else might be responsible for that error?

    Thank you for any help on the matter!


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Marcel Ramos
Bioconductor Core Team Member
Roswell Park Cancer Institute

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