[Bioc-devel] strange error in Jenkins build for singleCellWorkflow

[Obenchain, Valerie]

The latest build of simpleSingleCell (Build #48: Jun 20, 2017 5:37:13
AM) is failing because GenomicFeatures can't be loaded. GenomicFeatures
broke because of the new versions of DBI and RSQLite released over the
past week. Herve and I are working on fixing up GenomicFeatures and once
that's done I'll get back to troubleshooting simpleSingleCell.

Valerie


On 06/20/2017 10:24 AM, Obenchain, Valerie wrote:
> Thanks for the report Aaron. I'll take a look.
>
> Valerie
>
> On 06/20/2017 07:10 AM, Aaron Lun wrote:
>> Hi all,
>>
>>
>> I'm getting a curious error in the Jenkins log when I try to build the singleCellWorkflow:
>>
>>
>> http://docbuilder.bioconductor.org:8080/job/simpleSingleCell/48/label=master/console
>>
>>
>> The key part is at the bottom:
>>
>>
>> Error: package or namespace load failed for 'GenomicFeatures' in dyn.load(file, DLLpath = DLLpath, ...):
>>  unable to load shared object '/var/lib/jenkins/R/x86_64-pc-linux-gnu-library/3.4/Rsamtools/libs/Rsamtools.so':
>>   `maximal number of DLLs reached...
>>
>>
>> The workflow had previously been running fine on the build system; I'm not quite sure what's going on here, given that it's not even failing at the point where I made the latest changes.
>>
>> Cheers,
>>
>> Aaron
>>
>> 	[[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>
>
> This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>



This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.