[Bioc-devel] how to avoid the warning of replacing previous import edgeR::rpkm by NOISeq::rpkm when loading ComSeq

[Martin Morgan]

On 06/22/2017 03:10 PM, Li, Dongmei wrote:
> Hi All,
> 
> I am using both part of edgeR and NOISeq functions in a new package and got the following warning when conducting package check:
> 
> Warning: replacing previous import edgeR::rpkm by NOISeq::rpkm when loading ComSeq
> 
> ComSeq is the name of my new package and I used the following import statement in NAMESPACE:
> 
> import(edgeR, DESeq2, EBSeq, samr, NOISeq)
> 
> I tried to add "import(NOISeq, rpkm)", but still get the same warning.
> 
> Any help is highly appreciated.

see importFrom() and import(except=) in Writing R Extensisons section 1.5.1.

https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Specifying-imports-and-exports

Martin

> 
> Kind regards,
> 
> Dongmei
> 
> 
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> 
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