[Bioc-devel] how to avoid the warning of replacing previous import edgeR::rpkm by NOISeq::rpkm when loading ComSeq

[Li, Dongmei]

Hi Martin,

Thanks so much for all your help!

Best,
Dongmei

On 6/22/17, 4:05 PM, "Martin Morgan" <martin.morgan at roswellpark.org> wrote:

>On 06/22/2017 03:10 PM, Li, Dongmei wrote:
>> Hi All,
>> 
>> I am using both part of edgeR and NOISeq functions in a new package and
>>got the following warning when conducting package check:
>> 
>> Warning: replacing previous import edgeR::rpkm by NOISeq::rpkm when
>>loading ComSeq
>> 
>> ComSeq is the name of my new package and I used the following import
>>statement in NAMESPACE:
>> 
>> import(edgeR, DESeq2, EBSeq, samr, NOISeq)
>> 
>> I tried to add "import(NOISeq, rpkm)", but still get the same warning.
>> 
>> Any help is highly appreciated.
>
>see importFrom() and import(except=) in Writing R Extensisons section
>1.5.1.
>
>https://urldefense.proofpoint.com/v2/url?u=https-3A__cran.r-2Dproject.org_
>doc_manuals_r-2Drelease_R-2Dexts.html-23Specifying-2Dimports-2Dand-2Dexpor
>ts&d=DQICaQ&c=4sF48jRmVAe_CH-k9mXYXEGfSnM3bY53YSKuLUQRxhA&r=azjhQW59umxfk6
>7jsIXeg7AS2ugqKLkykGYJFRwaLto&m=s-ReclUo_mEHQVPAfT1cjSIHHiJwPDdKOcV8tjryoC
>M&s=6vBWeWQNB1YfTwHYzDSsdA08KB6zK5aLb4toAIOHrVc&e=
>
>Martin
>
>> 
>> Kind regards,
>> 
>> Dongmei
>> 
>> 
>> 	[[alternative HTML version deleted]]
>> 
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>
>
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