[Bioc-devel] LOBSTAHS dev build failing on toluca2; version does not update in devel
james.r.collins at aya.yale.edu
Thu Jan 26 18:04:07 CET 2017
Thanks, Kasper. On your second point: Yes, several recent updates. The bump to v1.1.2 was two days ago, so I figured that would have been reflected in a newer build already. I will give it a few more days.
> On Jan 26, 2017, at 11:57 AM, Kasper Daniel Hansen <kasperdanielhansen at gmail.com> wrote:
> It happens in devel that your dependencies fail and then your package fails. Right now XCMS fails in devel because mzR fails. That will presumably be sorted out.
> The latest build report
> http://bioconductor.org/checkResults/3.5/bioc-LATEST/LOBSTAHS/ <http://bioconductor.org/checkResults/3.5/bioc-LATEST/LOBSTAHS/>
> is 1.1.1. Did you do a couple of updates very recently - remember the build system gets run (at most) daily.
> On Thu, Jan 26, 2017 at 9:53 AM, James Collins <james.r.collins at aya.yale.edu <mailto:james.r.collins at aya.yale.edu>> wrote:
> Hi all:
> Two questions regarding the LOBSTAHS package:
> 1. Dev build seems to be failing (“error”) on toluca2 after I pushed some updates from our git repository to Bioc svn. Error is:
> * installing to library ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library’
> ERROR: dependencies ‘xcms’, ‘CAMERA’ are not available for package ‘LOBSTAHS’
> * removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/LOBSTAHS’
> However, seems to build fine on oaxaca. Any ideas why this is happening? xcms and CAMERA should be available for the package, correct?
> 2. After bumping the version number (from 1.1.1 to 1.1.2 and then 1.1.3) with the updates, the latest version (1.1.3) does not appear to be showing on the dev page, which leads me to believe it is not the version being disseminated with biocLite()
> http://bioconductor.org/packages/3.5/bioc/html/LOBSTAHS.html <http://bioconductor.org/packages/3.5/bioc/html/LOBSTAHS.html> <http://bioconductor.org/packages/3.5/bioc/html/LOBSTAHS.html <http://bioconductor.org/packages/3.5/bioc/html/LOBSTAHS.html>>
> Perhaps this is because I cherry-pick all my commits when committing from git to the Bioc svn? Or because of the error message?
> Thanks in advance!
> Jamie Collins
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