[Bioc-devel] LOBSTAHS dev build failing on toluca2; version does not update in devel

James Collins james.r.collins at aya.yale.edu
Thu Jan 26 16:53:57 CET 2017

Hi all:

Two questions regarding the LOBSTAHS package:

1. Dev build seems to be failing (“error”) on toluca2 after I pushed some updates from our git repository to Bioc svn. Error is:
* installing to library ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library’
ERROR: dependencies ‘xcms’, ‘CAMERA’ are not available for package ‘LOBSTAHS’
* removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/LOBSTAHS’
However, seems to build fine on oaxaca. Any ideas why this is happening? xcms and CAMERA should be available for the package, correct?

2. After bumping the version number (from 1.1.1 to 1.1.2 and then 1.1.3) with the updates, the latest version (1.1.3) does not appear to be showing on the dev page, which leads me to believe it is not the version being disseminated with biocLite()

http://bioconductor.org/packages/3.5/bioc/html/LOBSTAHS.html <http://bioconductor.org/packages/3.5/bioc/html/LOBSTAHS.html>

Perhaps this is because I cherry-pick all my commits when committing from git to the Bioc svn? Or because of the error message?

Thanks in advance!

Jamie Collins

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